Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0178 ATGTCTCCGTCACTCTCCGCAACCTTCCCCGACGGGGATGCTTCTTCCCCCGCCTCCAACGGCGAGATCATGTTGTTTGGCGTTAGAGTCGTCGTCGATTCCATGAGGAAGAGTGTGAGCTTGAACAATCTCTCGCAGTACGAGCATCCTCAGGATGGCTCGAACAACAATAAGGAAGATGTTCTGGCCGCCGGTTATGCCTCCGCTGATGATGCCGTGGTTCATAATTCCGGCAAGCAGCGCGAGCGTGAGCGCAAACGAGGGGTTCCATGGACGGAGGAAGAACACAGGTTGTTCTTGCTGGGATTGCAGAAGGTAGGGAAGGGCGATTGGAGAGGGATCTCAAGGAACTATGTGAAAACAAGGACTCCTACACAGGTTGCGAGCCATGCTCAGAAGTACTTCCTTCGAAAATGCAACCTTAATCGTCGACGCCGTAGATCCAGCTTATTTGACATTACCACTGATTCGGTTTCGGCAAATCCAGTGGGAGAACAGATCCAGCCTCAAGATAATATGCCTCATTCACATCTTGTGCACCCTGCATCCTCTGAAACCTGCAACATCAATGGATTTCCAATGATGCCATTATATCCAATGGCTGTTGGGTCTGGCACAATTTCATTCCCGGGCAGGAATCCGGTGGAGAAGCTTCCTCTGGGGCAAGGAAATTATGAACACAACGGTCTAATTCCTTCTGTTCCAGGTCCAAAAGCTTCTGCTATGTCCAATGTTGCCTTGAGTTCGAGCTCATCTATTGATCTACCGACGCTGTCTCTTGGGCTATCCTTGTCGTCCGATCATAGAAGTACATCATCAAGGCACTCAAGTTTACATGCAGTGCCATGTCTCAACAATGGAGAAAGCATCATAAGCGTTGCTTGA 885 0.4972 MSPSLSATFPDGDASSPASNGEIMLFGVRVVVDSMRKSVSLNNLSQYEHPQDGSNNNKEDVLAAGYASADDAVVHNSGKQRERERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRKCNLNRRRRRSSLFDITTDSVSANPVGEQIQPQDNMPHSHLVHPASSETCNINGFPMMPLYPMAVGSGTISFPGRNPVEKLPLGQGNYEHNGLIPSVPGPKASAMSNVALSSSSSIDLPTLSLGLSLSSDHRSTSSRHSSLHAVPCLNNGESIISVA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0178 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 138 IPR006447 GO:0003677
Lele23g0178 294 PANTHER TRANSCRIPTION FACTOR KUA1 18 235 - -
Lele23g0178 294 SMART sant 87 137 IPR001005 -
Lele23g0178 294 SUPERFAMILY Homeodomain-like 85 137 IPR009057 -
Lele23g0178 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Lele23g0178 294 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Lele23g0178 294 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Lele23g0178 294 FunFam transcription factor MYB1R1 89 140 - -
Lele23g0178 294 ProSiteProfiles SANT domain profile. 86 139 IPR017884 -
Lele23g0178 294 CDD SANT 90 135 IPR001005 -
Lele23g0178 294 Gene3D - 89 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0178 Lele-ChrLele23 1126084 1127760 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele23g0178 Myb_DNA-binding 5.4e-11 CL0123