Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0156 ATGACCGGTGGGAGGGTCCCCATGGGTTCTCTTACTAATGCTTCCAATTTGGGTCTTTTGCTTCAAAATCAAGCCGCTCCTTCCTCTTCTGACTCTCTCGATGCCTTTTTCCTTTCTGGCTCTTCCTCTTCTTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTAAACGAGGGAAAGGGTGTAACCTGTCATTCTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGACTTGGATGAATACTTTCATCAACCTGAGAAGAAGAGGCGGCTGACCACTGATCAAGTCCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAACAAACTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGATTGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAATCGCCGCGCGCGATGGAAGACAAAACAGCTGGAGAAGGATTTTGATTCTCTGCAGGCTAGCTACGACAGTCTTAAAGCTGACTATGATAACCTTCTCAAGGAGAAAGATAAATTAAAGGCGGAGGTTGCAAATCTCACAGAGAAGGTGCTTCTTAGAGAAAAACAAGAGGGAAACTGCAAGCAGGATGACACGATGAGCAAACTTAAAGAACCACAACAACAAAAGCCCTCGTTTGAGACTACTTCCGATGGTGAAGGCTCCAAGGTCTCTGTTGGGGCATGCAAACAGGACGACATACGTTCAGCAAAGAGTGACATATTTGATGCAGATAGCCCACATTACACTGATGGAGTTCACTCTGCGCTGCTGGAGCCTGGGGATTCCTCTTATGCATTTGAACCGGATCAGTCAGATTTATCTCAGGATGAAGTAGACAACTTGAGCAAGAACTTGTTTCCTCGATACATATTTCCAAAGCTTGAAGACGTTGACTACTCGGACCCCTCTGAAAGTTCATGCAGTTTTGGATTCCCAGCTGAAGATGATGATGCCTTTTGGTCCTGGTCTTACTAG 984 0.4543 MTGGRVPMGSLTNASNLGLLLQNQAAPSSSDSLDAFFLSGSSSSFLGSRSMVSFEDVKRGKGCNLSFFSPFDHDENGDEDLDEYFHQPEKKRRLTTDQVQFLEKSFEVENKLEPERKVQLAKEIGLQPRQVAIWFQNRRARWKTKQLEKDFDSLQASYDSLKADYDNLLKEKDKLKAEVANLTEKVLLREKQEGNCKQDDTMSKLKEPQQQKPSFETTSDGEGSKVSVGACKQDDIRSAKSDIFDADSPHYTDGVHSALLEPGDSSYAFEPDQSDLSQDEVDNLSKNLFPRYIFPKLEDVDYSDPSESSCSFGFPAEDDDAFWSWSY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0156 327 FunFam Homeobox-leucine zipper protein HAT5 83 147 - -
Lele23g0156 327 SUPERFAMILY Homeodomain-like 74 147 IPR009057 -
Lele23g0156 327 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Lele23g0156 327 MobiDBLite consensus disorder prediction 193 227 - -
Lele23g0156 327 Coils Coil 144 192 - -
Lele23g0156 327 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Lele23g0156 327 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Lele23g0156 327 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lele23g0156 327 CDD homeodomain 90 146 IPR001356 GO:0003677
Lele23g0156 327 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Lele23g0156 327 Gene3D - 93 139 - -
Lele23g0156 327 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Lele23g0156 327 Gene3D - 140 191 - -
Lele23g0156 327 SMART HOX_1 88 149 IPR001356 GO:0003677
Lele23g0156 327 MobiDBLite consensus disorder prediction 207 224 - -
Lele23g0156 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 219 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0156 Lele-ChrLele23 988049 989611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0156 27 257 Homeobox Transcription Factor Family AT3G01470 44.068 6.41e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele23g0156 Homeodomain 1.3e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0156 23 988049 989611 Lele24g1784 24 22974362 22975960 ECH
Lele23g0156 23 988049 989611 Lele23g0156 23 988049 989611 ECH
Lele21g1854 21 26014847 26016447 Lele23g0156 23 988049 989611 hybridization
Lele22g1829 22 23327173 23328763 Lele23g0156 23 988049 989611 hybridization