Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0151 ATGGAAGGAAACAATGCATCATTAAGGATAGTGTTGATATTATGTGCAGTAGCAATAGGGAGGGTGAGAGGAGAGTACGATGATGAAGTATGGCGAAGACGATCCGAGGAAGCCAAGAAGGCAGCTCAAGAAGCTTACCACCCTGATCCTCTTCAAGTCACTGCAGATTTCAATCACCAAGTTCACTTGGCTATGGAAGGTATCAGCAACACCACAAGAAGGGACTTGTTGGCTGGGCGGCAGCAAAAGCACAAACATGCATGCATGGCCACTAACCCCACCGATCAATGCTGGCGCTGCGACCCAAACTGGGCAAACAACCGCAAGAAGCTCGCCAACTGTGCCATCGGCTTCGGACGTGGCACCACCGGCGGCAAAGCCGGCGAAATCTACGTCGTCACCGACCCTTCCGATGACAACCTCCTCAAACCCAAACCAGGGACCTTACGATACGCCGTGATCCAACCGAGGCCGCTTTGGATCATCTTCGCGCGCAGTATGTTCATAACCCTGACGCAAGAGCTGATGATGACCAGCGACAAGACCATAGACGGGCGTGGAGTCAACGTGATGCTATTTGGGGCGAGTGATACGTTGGAGGCAGGAGACAGATTAATGCAAATGACGGTCGCGTTCAACCATTTTGGGGAAGGATTGGTGCAGAGGATGCCGAGGTGCCGATGGGGTTTCTTTCATGTAGTGAACAATGATTACACGCATTGGCACATGTACGCCATTGGAGGCAGCTCCGCTCCCACCATCATCAGCCAAGGGAACCGATTCGTCGCTCCTGTTGATCGTGCCAGCAAAGAGGTGACGAAGAGGGATTATGCGCCCCGCAATGTGTGGAAGAATTGGAATTGGAGATCGGAGGGGGATTTGTTGATGAATGGCGCCTTCTTCATCGAGTCTGGAAAACCCACGCCACTTCCTCGCAATCACATCCAAGCAAAACCAGGCACTATGGCCGCCAAACTTACGCGCTTTGCTGGCGCTCTCAAATGTGTCAAAACTGATCAAAATGCTTTGATCATGAATCCGTGCTACTTGGGGAAGTTGGGTGGGGGAGGATCCACTATAGTAAGCTGA 1089 0.5207 MEGNNASLRIVLILCAVAIGRVRGEYDDEVWRRRSEEAKKAAQEAYHPDPLQVTADFNHQVHLAMEGISNTTRRDLLAGRQQKHKHACMATNPTDQCWRCDPNWANNRKKLANCAIGFGRGTTGGKAGEIYVVTDPSDDNLLKPKPGTLRYAVIQPRPLWIIFARSMFITLTQELMMTSDKTIDGRGVNVMLFGASDTLEAGDRLMQMTVAFNHFGEGLVQRMPRCRWGFFHVVNNDYTHWHMYAIGGSSAPTIISQGNRFVAPVDRASKEVTKRDYAPRNVWKNWNWRSEGDLLMNGAFFIESGKPTPLPRNHIQAKPGTMAAKLTRFAGALKCVKTDQNALIMNPCYLGKLGGGGSTIVS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0151 362 Pfam Pectate lyase 189 261 IPR002022 -
Lele23g0151 362 SMART amb_all 101 267 IPR002022 -
Lele23g0151 362 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lele23g0151 362 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lele23g0151 362 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lele23g0151 362 Gene3D - 190 334 IPR012334 -
Lele23g0151 362 Gene3D - 91 189 IPR012334 -
Lele23g0151 362 PANTHER PECTATE LYASE 18-RELATED 189 338 IPR045032 GO:0030570
Lele23g0151 362 SUPERFAMILY Pectin lyase-like 112 336 IPR011050 -
Lele23g0151 362 Pfam Pectate lyase, N terminus 28 76 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0151 Lele-ChrLele23 971888 973953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0151 190 335 Polysaccharide Lyase AT1G14420 60.645 7.85e-58 192