Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0140 ATGGCGGATTCGCCCAGGGGCTCTTCCAGCTTCTGGACTCAGGCCAACGCTCTCCTTCGCAAAAATCTCACTTTCCAGAAACGAAATGTAAAGACAAATATACAGCTCATCTTATTCCCATTTGTCATCTGTGTGCTGCTTGTTATTTTCCAAGAAATAATTGATAATGAATTGGATAAGCCAGAAAATAAGTGTGGTTGCATTTGTATTAAGAGAGATGGAGATAAGTGTCTGGACGAAGCATGTGGGATTCAATACTCAGACACAGATCAAGTTGCAACTTGTCCAATTCCTAATCCTCCAGAATGGCCTCCATTGTTACAAGTGCCTGCTCCCCAATATCGAGCCGTGCAAAACGATATTACTCCATCCTCGGATTTGCCAAATGATTCTTGCAGGAGGACAGGGTCGTGCCCTGTAACTTTTCTCTTCACGGGCAATAATCAGTCTTTTGGAGAAACTTTGTTTGGAAATATGTTTAAAACTACCTTTAGTGTGAATACCTCTGATATCGTGGGTAGTTTGGCAAGAAATGTCCTGGGATCAGAATCAATGCCACAATCGCAAAATTTTCTTGACTCAGCTTTCTTTTCGGGTCTTCCCATATATTATCTGCAAAATCAGTGCGCACAGAACTCTACATTCTCTGTTCCAATCGAGATATCAACCAATACCATCCAGCAAGAGATTAGATGTGCTCAAGGTTTACATTTATGGCGAAATAATTCTTCTGACGTGAACAATGAGCTATATAAAGGTTATCGAAAAGGGAACCTAGAGAGACAGATCAATGAGGTAGCTGCAGCCTATGATTTTCTAAATTCAAGTAAGAATAGCTTCAATGTCATCACATGGTACAACTCAACCTATAAGAATGACACCGGTTTCCAGCAAATTGCATTGGCGCGAGTTCCCCGTTTAGTAAATTTGGTATCAAATGCCTTCCTTCAATTTCTGCAGGGTTCGGGTACTGAGATGTTATTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCATTGAGAATTGACGTGGCTTCTCTTCTGGGTTCCCTCTTCTTTACTTGGGTCTTCCTGCTACTTTTCCCTGTATTTTTGACATCGTTGGTATACGAGAAGGAAAAGAAACTCAGAATAATGATGAAGATGCATGGTCTTGGCGATGGGCCATATTGGATGATATCCTATGGCTATTTTTTTGCCTTGTCAGTGCTCTATGTGCTATGCTTTGTGATATTTGGCTCCCTCATAGGGTTGAAATTCTTTACATTGAATGACTACAGCATCCAATTCGTTTTTTACTTCCTCTTTATAAACTTGCAAATTTCATTGGCATTTCTTGTGGCATCCATGTTTTCAAATGTTAAGACAGCTACAGTAATTGCATATATCGGTGTCTTTGCATCTGGGCTTTTAGGTGGCTTTCTTTTCAGCTTTTTTCTTGAAGACGCATCATTTCCAAGAGGGTGGATAGTTGTTTTAGAGTTGTTTCCTGGGTTTGCGTTATACCGTGGACTCTATGAGTTTGCAGCATATGCCTTCGAAGCAAATGCTACAGGAAACGATGCAATGCGATGGGGAGATCTGAATGATAGTGAAAATGGCATGAGAGCGGTCTTAATTATCATGTTTATTGAGTGGTTTGTGGGGCTTCTTTTTGCTTATTACATTGATCAAGTATCTGGAAGTCGCAAAAGTCCTCTTTTTTTCTTGAAAAGATTTCAGAAAAAGCCTATGTCATCATTCCGGAATCCTAGTATTCAAAGGCAGGGATCAAAAGTTTTTGTTCAGATGGAGAAACCTGATGTCAGTCAAGAGAGGGAAAAGGTTGAGCAGCTGCTACTTGAACCAACTATGAATCATGCAATTTTATGCGACAACCTAAGAAAGGTGTATCCATCGAGGGATGGAAACCCAGAGAAATATGCAGTGAGAGGTTTATCTCTTGCTTTGCCTCAAGGGGAATGCTTTGGTATGCTTGGCCCCAATGGTGCTGGGAAGACCTCATTTATCAATATGATGATTGGTCTCACAAAGCCAACCACTGGTGCAGCATTTGTTCATGGTCTGGACATAAGAACTCAAATGGGTGAAATATATACTAGCATGGGCGTATGTCCACAGCATGACTTGCTGTGGGAAAGTCTAACTGGAAGAGAACACTTGCTCTTCTATGGAAGACTTAAAAATCTTAAAGGCTCGGCCTTAACACAAGCAGTGGAAGAATCTCTGAAAAGTGTAAACCTTTTCCATGGAGGAGTTGCTGATAAAAGAGCAGGAAAGTACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATCGGAGATCCCAAAGTTGTTTATATGGATGAACCAAGTACTGGTTTAGACCCTGCATCAAGAAACAATTTATGGAATGTTGTCAAGCGTGCAAAGCAGAATCGGGCAATCATACTAACCACTCATTCCATGGAAGAAGCAGAGGTCTTATGTGACCGAATAGGAATATTCGTAGATGGAAGCTGGCAGTGCATAGGAAATCCAAAAGAGCTAAAAGCAAGATATGGAGGAAGCTATGTGTTCACAATGACAACATATGCAGATCATGAGAATGAAGTGGAGAACTTGGTGCACAAGCTGTCCCCAAATGCTAGCAAGACATACCATATCTCTGGAACTCAGAAATTTGAGCTGCCAAAAGAAGAGGTCAGAATAGCAGATGTCTTCCGAGCTATTGGTATTGCAAAGAGGAACTTCACAGTGTTTGCATGGGGTTTAACAGACACCACAATGGAAGATGTCTTCATTAAGGTTACACGTGAGGCTCAGGCATTCAACTCTTTGTCATAG 2838 0.4116 MADSPRGSSSFWTQANALLRKNLTFQKRNVKTNIQLILFPFVICVLLVIFQEIIDNELDKPENKCGCICIKRDGDKCLDEACGIQYSDTDQVATCPIPNPPEWPPLLQVPAPQYRAVQNDITPSSDLPNDSCRRTGSCPVTFLFTGNNQSFGETLFGNMFKTTFSVNTSDIVGSLARNVLGSESMPQSQNFLDSAFFSGLPIYYLQNQCAQNSTFSVPIEISTNTIQQEIRCAQGLHLWRNNSSDVNNELYKGYRKGNLERQINEVAAAYDFLNSSKNSFNVITWYNSTYKNDTGFQQIALARVPRLVNLVSNAFLQFLQGSGTEMLFEFVKEMPKPETPLRIDVASLLGSLFFTWVFLLLFPVFLTSLVYEKEKKLRIMMKMHGLGDGPYWMISYGYFFALSVLYVLCFVIFGSLIGLKFFTLNDYSIQFVFYFLFINLQISLAFLVASMFSNVKTATVIAYIGVFASGLLGGFLFSFFLEDASFPRGWIVVLELFPGFALYRGLYEFAAYAFEANATGNDAMRWGDLNDSENGMRAVLIIMFIEWFVGLLFAYYIDQVSGSRKSPLFFLKRFQKKPMSSFRNPSIQRQGSKVFVQMEKPDVSQEREKVEQLLLEPTMNHAILCDNLRKVYPSRDGNPEKYAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTTGAAFVHGLDIRTQMGEIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKSVNLFHGGVADKRAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQNRAIILTTHSMEEAEVLCDRIGIFVDGSWQCIGNPKELKARYGGSYVFTMTTYADHENEVENLVHKLSPNASKTYHISGTQKFELPKEEVRIADVFRAIGIAKRNFTVFAWGLTDTTMEDVFIKVTREAQAFNSLS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0140 945 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524|GO:0016887
Lele23g0140 945 SMART AAA_5 653 836 IPR003593 -
Lele23g0140 945 FunFam ABC transporter A family member 7 612 888 - -
Lele23g0140 945 Pfam ABC transporter 645 789 IPR003439 GO:0005524
Lele23g0140 945 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 860 IPR003439 GO:0005524
Lele23g0140 945 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 589 939 IPR026082 GO:0016020|GO:0055085|GO:0140359
Lele23g0140 945 CDD ABC_subfamily_A 627 848 - -
Lele23g0140 945 Gene3D - 614 887 IPR027417 -
Lele23g0140 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 851 IPR027417 -
Lele23g0140 945 Pfam ABC-2 family transporter protein 240 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0140 Lele-ChrLele23 893591 901387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0140 599 871 Calmodulin-binding Proteins AT2G36910 22.378 1.32e-12 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0140 23 893591 901387 Lele23g0140 23 893591 901387 ECH
Lele21g1874 21 26131972 26133458 Lele23g0140 23 893591 901387 hybridization
Lele22g1843 22 23416639 23424410 Lele23g0140 23 893591 901387 hybridization