LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g0119	ATGGAAGTTTTACCATGCTCCGGTCAGTCACGAAAGAGCCTCTTTCTCTTCCCTTTATTCCCATACCTGTGCGTGTATATATACAAGGCACCTTCCACTGTGGACGCTTGTCACTGTATTCCTCTGAAGAACAAGGAAAGCAATAGAGAGAGAGAAGAGAGAGAGAGAGAGATCGTAATGGGGAGACCTCCTTGCTGCGACAAAATTGGGGTTAAGAAAGGACCTTGGACTCCTGAAGAAGACATCGTCTTGGTCTCGTACATCCAGGAACACGGCCCTGGCAACTGGAGATCTGTTCCCACCAATACCGGTTTGATGAGATGCAGCAAAAGCTGCCGACTCCGATGGACCAACTATCTCCGCCCCGGTATCAAACGCGGTAACTTCACCGAACACGAAGAGAAGATGATCATCCACCTTCAAGCTCTTCTCGGAAATAGGTGGGCGGCCATAGCTTCTTATCTTCCACAGAGAACAGACAATGACATAAAGAATTACTGGAACACGCATCTGAAGAAGAAGCTCATGAAGAAGGCAGGAAAAAATGGTAGCGGCTGCAGGGAAGGTGGAAGCAGTAACGATCAGGAAGACGGTGGATATTTGTCGTCATCTTCATCGCAACCAAACAAGGGTCAGTGGGAAAGAAGGCTTCAAACCGATATCCACATGGCCAAAAAAGCCCTTTGTGAAGCTCTCTCCATTAACATGCCCACTCCTTCCACATTAAATCATAATTCCCCCATCTTCTCTGACTGTAATAATAATAATAATAAGCCCTCATCATCATCCATTTCCTTCAACCCCATCACCACAATAACAAAATTACCCGACCAACTAGCAACTAATTCATCGTACGCGTCGAGTGCCGATAACATAGCTCGACTTCTGCAAAACTGGATGAAGAAGACGCCGAACTCGTTCTCTGGTTCGACTTCGAGTGAAGGTGAAGGAGCACAGAGTGGGAGTGGGACTACAACACCAGATCAAGGCCTTGACTATAGCTCTCTCTTGAGCTTCAATAGTAACATGAACAACAACTCTGATGTGTCTACAGAGAGTAATAACTTCTTGCAAGAAGAAAGCAAGCCGAATTTGGATTCTCATGATCATCATGTGCCTTTCACGCTTCTGGAGAATTGGCTTTTTGATGATGCTGCAAATCCACAAGGCCACGAAGATCTGTTGACCATGTCACTTCAGGAAACTACATCAAACCTATTTCAGACTCAGTTGGGGAAGGAGAAATTCTAG	1251	0.458	MEVLPCSGQSRKSLFLFPLFPYLCVYIYKAPSTVDACHCIPLKNKESNREREEREREIVMGRPPCCDKIGVKKGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLMKKAGKNGSGCREGGSSNDQEDGGYLSSSSSQPNKGQWERRLQTDIHMAKKALCEALSINMPTPSTLNHNSPIFSDCNNNNNKPSSSSISFNPITTITKLPDQLATNSSYASSADNIARLLQNWMKKTPNSFSGSTSSEGEGAQSGSGTTTPDQGLDYSSLLSFNSNMNNNSDVSTESNNFLQEESKPNLDSHDHHVPFTLLENWLFDDAANPQGHEDLLTMSLQETTSNLFQTQLGKEKF	416

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g0119	416	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	60	341	-	-
	Lele23g0119	416	SUPERFAMILY	Homeodomain-like	70	167	IPR009057	-
	Lele23g0119	416	MobiDBLite	consensus disorder prediction	186	213	-	-
	Lele23g0119	416	CDD	SANT	128	171	IPR001005	-
	Lele23g0119	416	CDD	SANT	75	120	IPR001005	-
	Lele23g0119	416	Coils	Coil	42	62	-	-
	Lele23g0119	416	SMART	sant	72	122	IPR001005	-
	Lele23g0119	416	SMART	sant	125	173	IPR001005	-
	Lele23g0119	416	MobiDBLite	consensus disorder prediction	178	213	-	-
	Lele23g0119	416	MobiDBLite	consensus disorder prediction	304	353	-	-
	Lele23g0119	416	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	125	175	IPR017930	-
	Lele23g0119	416	Gene3D	-	72	125	-	-
	Lele23g0119	416	Pfam	Myb-like DNA-binding domain	73	120	IPR001005	-
	Lele23g0119	416	Pfam	Myb-like DNA-binding domain	126	171	IPR001005	-
	Lele23g0119	416	ProSiteProfiles	Myb-like domain profile.	121	171	IPR001005	-
	Lele23g0119	416	FunFam	MYB-related transcription factor	72	125	-	-
	Lele23g0119	416	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	68	124	IPR017930	-
	Lele23g0119	416	Gene3D	-	127	196	-	-
	Lele23g0119	416	ProSiteProfiles	Myb-like domain profile.	68	120	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g0119	Lele-ChrLele23	770091	772377	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g0119	60	399	MYB Transcription Factor Family	AT5G62470	52.909	3.40e-112	331

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele23g0119		Myb_DNA-binding	6.4e-14	CL0123