Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0099 ATGCACTTATATGAACTCAGTCTAAGGCTGCTGCTGAGAAGCGTAGTTTGTGTAGAATATGTGTGTAGAATATTTTTGGATAGTTGTTTTCATTACATGATTTCTCCCTCAGTTGACACTTGTGGCCACTTTGCTTCATTCCTGGCTTTATCTGTCTCCATCCCAGCACAGAGCGACTCAAGTTTCTTTGTCCCTGCTACGGTGATTACCATTATTATGGAAGCTGAAGAGATCGAAAGAGTTGGGAGGTTCCATTTTGTATCCAAGTTGATACTATCCGCCATTTCTGGGGCTCTGACGGGATGTTTTGCCATTGCTGGAGCCATCACAGGAGCTATAGCTGGTGCATTGGCTAGTAGGGCTTCTGAGAGCGGTTTCCTCCGTGGAGCTTCATTGGGGGCCATTGCTGGGGCTATAATATCTGTTGAGGTGTTAGAAGCTTCCCGTGCCTACTGGTGTTTAGAGCAAACTGGCTCAAGGAGCTCATCATCCATGGTTGATGATTCTATGCCTTGTGTTTGTTGGTGTGACTATGCGTTGGATGACATCTTAAAGAATCTAGGAGGCGGTCTTAATTCTTTAGCAATAAATCAATTCTCTACCATTTGGATCCAGGCAGATTTCATAGAGCAACTTTTTCGTGGGAGGATTGCAGAGGAACAATTTTCACGAGCTATACTAACTGCTTACAGTTGGCAGGTTGGGGTTGCTAATACAGGCTATGATGAGATTCCTGAGGTTCTTAGCTTAGTTTCACCGAGAGGATTGTCTGGGGATTCGTTGAAGAAGTTACCACACCATGTTATCTTAAAGGACATGAAAACGGAGAATCTCTGCTGCACAATATGTTTGCAGGATTTTGAAGTTGGAGAAGTTGCAAGGAGCTTACCTCGATGTCGACATACGTTTCACTTGAACTGTGTAGACCGATGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGACAATATGTATAG 978 0.4397 MHLYELSLRLLLRSVVCVEYVCRIFLDSCFHYMISPSVDTCGHFASFLALSVSIPAQSDSSFFVPATVITIIMEAEEIERVGRFHFVSKLILSAISGALTGCFAIAGAITGAIAGALASRASESGFLRGASLGAIAGAIISVEVLEASRAYWCLEQTGSRSSSSMVDDSMPCVCWCDYALDDILKNLGGGLNSLAINQFSTIWIQADFIEQLFRGRIAEEQFSRAILTAYSWQVGVANTGYDEIPEVLSLVSPRGLSGDSLKKLPHHVILKDMKTENLCCTICLQDFEVGEVARSLPRCRHTFHLNCVDRWLVKNDSCPVCRQYV 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0099 325 SUPERFAMILY RING/U-box 261 325 - -
Lele23g0099 325 SMART ring_2 280 321 IPR001841 -
Lele23g0099 325 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 76 166 IPR044523 -
Lele23g0099 325 Pfam Ring finger domain 280 322 IPR001841 -
Lele23g0099 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 325 IPR013083 -
Lele23g0099 325 CDD RING-H2_PA-TM-RING 279 322 - -
Lele23g0099 325 ProSiteProfiles Zinc finger RING-type profile. 280 322 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0099 Lele-ChrLele23 652230 656061 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0099 67 325 C3H Transcription Factor Family AT1G74410 46.154 1.82e-67 209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0099 23 652230 656061 Lele23g0099 23 652230 656061 ECH
Lele21g1915 21 26357430 26361123 Lele23g0099 23 652230 656061 hybridization
Lele22g1882 22 23678670 23680924 Lele23g0099 23 652230 656061 hybridization