Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0097 ATGGAGATTGAAGGGTTTGATTTGAACAAAGTCTATGCTAATGCTGGAAATCATAGCAAGAGGGCTGATGATTTCATTGATAGAAGCAAGGTGAAAATATTGTTGTGCGATAGCGATACCAAGAGTTCGGAAGAGGTTTTAGCGCTTCTTTCGGGATGTTCTTATCAAGTTACTTCAGTAAGCTCGCCAAGGAAGGTAATCGAAGTACTGAATGCAGAGGCACAAGATATTGATATCATACTAACTGAAGTTGGCCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATTGCACGAAACAAAGATTTGCATCGAATTCCTGTCATAATGATGTCGGCACACGATGAGGTATCCATTGTTATGAAGTGTTTGAGACTTGGAGCAGCAGACTATCTAATAAAGCCTTTACGCTCTAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGTCTGACAGAGAAGAACATAATGAACTATAATTTTGATCTGGTAGCATCAGCCATAATGAACTATGATTCTGATCTGGTAGCATCAGACCCTGGAGATGGTAATATAACCACTACCGCCTTGTTCTCAGACGATACAGAAGACAAGTCCAACAGAAGCACTAATCCAGAGACAGGAATGTCAATCCAGCAGCAACATGAGTCTTCAGCTGCTGCTACCTATGCTCCTGAGGAGCCTCCGGGTGTTCATGCATCAGATTATTGGCCTGGTGTGCCTGGAATTAGTGATCGCCAGACAAGAAACTGTTCTTCAGTACCAAAGAAGAATGGACTTAGGATTGGGGAGTCATCGGCCTTCTTTAGTTATGTTAAAACAACCATGCAAAAGAGCAACGTACAAGGGATTCCTCAAGTTCAGAATAATGCTGCTACGCAACTGAGGATGGAAGACATGCATCAAACTTGTCCACAGGGGGTTCATGAAACTGGAGAGCCAAGTGAGAGACCTAATAAAGATGATTTACCCAGCAGCATCAGTAACCCTGATTCTTTCTCCGTCGACAATGCTTCTACACCACCCGCATTCACGGGAATTTTAAATCAAAAGAACTTCAGTGAAGAACATTTACCACAAGATGTCATCCATCTTAGAAATGGAAATCATATTTCTGAGACTGAAGTCCCAGGTACTACTTCCCAAAATGCTCATTTATATTATGTTTCAGGTTTCTTCAATCACCTTCTGATGCCATCCTCAGCGCCAATGTATCCAAAGAATCCCCAGGACCAACAGAATCATGCTAGTGCAACTATGATTGCACAGCACAATGACATTTCCCATTGTCTTCCCAATGGGAAAGGGATAAGTTCATTCCCATATTACCCGATGACTATGTGCTTACAGCCTGGTCAGACGATGTCCTCAGCTCATTCATGGCCGTTATTTGGAAGTTCCAGTTCTTCATCCAAAGCAAGACTGGATATAGTTGATAGAAGAGCAGAAGCATTGATGAAGTTTAGAAAGAAAAGGAAAGAACGATGCTTTGATAAGAAAATTAGGTATGTCAACCGGAAGCAGCTTGCTGAAAGGCGACCTCGCGTGAGGGGACAGTTTGTGAAGAAGTTGAACGGAGTAGTCAATGTTGATCTTAATGGACAACCTGCTTCCATTGAGTATGATGAGGAGGAGGACGACGACGACGACGATGAAGAGAACAATGTGAGAGATTCATCTCCTGAAGATGCTTGA 1716 0.4254 MEIEGFDLNKVYANAGNHSKRADDFIDRSKVKILLCDSDTKSSEEVLALLSGCSYQVTSVSSPRKVIEVLNAEAQDIDIILTEVGLPMKKGMKMLKYIARNKDLHRIPVIMMSAHDEVSIVMKCLRLGAADYLIKPLRSNELLNLWTHMWRRRRMLGLTEKNIMNYNFDLVASAIMNYDSDLVASDPGDGNITTTALFSDDTEDKSNRSTNPETGMSIQQQHESSAAATYAPEEPPGVHASDYWPGVPGISDRQTRNCSSVPKKNGLRIGESSAFFSYVKTTMQKSNVQGIPQVQNNAATQLRMEDMHQTCPQGVHETGEPSERPNKDDLPSSISNPDSFSVDNASTPPAFTGILNQKNFSEEHLPQDVIHLRNGNHISETEVPGTTSQNAHLYYVSGFFNHLLMPSSAPMYPKNPQDQQNHASATMIAQHNDISHCLPNGKGISSFPYYPMTMCLQPGQTMSSAHSWPLFGSSSSSSKARLDIVDRRAEALMKFRKKRKERCFDKKIRYVNRKQLAERRPRVRGQFVKKLNGVVNVDLNGQPASIEYDEEEDDDDDDEENNVRDSSPEDA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0097 571 MobiDBLite consensus disorder prediction 541 571 - -
Lele23g0097 571 SMART REC_2 31 146 IPR001789 GO:0000160
Lele23g0097 571 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 284 IPR045279 GO:0009736
Lele23g0097 571 MobiDBLite consensus disorder prediction 328 348 - -
Lele23g0097 571 Gene3D - 31 231 - -
Lele23g0097 571 SUPERFAMILY CheY-like 29 157 IPR011006 -
Lele23g0097 571 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Lele23g0097 571 Coils Coil 571 571 - -
Lele23g0097 571 MobiDBLite consensus disorder prediction 312 348 - -
Lele23g0097 571 MobiDBLite consensus disorder prediction 545 571 - -
Lele23g0097 571 ProSiteProfiles CCT domain profile. 488 530 IPR010402 GO:0005515
Lele23g0097 571 MobiDBLite consensus disorder prediction 194 264 - -
Lele23g0097 571 MobiDBLite consensus disorder prediction 209 227 - -
Lele23g0097 571 Pfam CCT motif 488 530 IPR010402 GO:0005515
Lele23g0097 571 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0097 Lele-ChrLele23 630298 634734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0097 20 570 Response Regulator Gene Family AT5G61380 45.469 6.40e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele23g0097 Response_reg 1.1e-17 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0097 23 630298 634734 Lele23g0097 23 630298 634734 ECH
Lele21g1917 21 26370140 26374108 Lele23g0097 23 630298 634734 hybridization
Lele22g1885 22 23692297 23696168 Lele23g0097 23 630298 634734 hybridization