Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0088 ATGGGTTGTGTGAATGCGAAGCAGGCGGTGTCGGTTACGCCTGCTATTGACCACTCCGGTGTGTTTCGGGGCAATGCGGGTACGGGAAATTCGGGAAGGAATTTAGTAGAGTCTGACAAGAAGAAGAAGAAGAGTGAGTCCGTGGGGCTGAGTAGAAGCGAGGTGGGCGATTCGGGAAGGGCGAGTTCGAATGGAGGTTGTGACTCGTATAGTTTCAGATTGGGGAATCTGCAAAAGTACGTAGAAGGAGAGCAAGTAGCAGCGGGTTGGCCGGGTTGGCTTACCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTGCCCATCCGAGCCGATGCGTTTGAGAAACTTGAGAAGATCGGACAAGGAACATACAGCAGTGTCTTCCGAGCGCGAGAACTCGAGACGGGTAAGATAGTGGCTTTGAAGAAGGTGCGGTTTGACAACTTTGAGCCCGAAAGTGTTAGGTTCATGGCTCGAGAAATAATGATTCTCAGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCCAAATTGTCCTGTAGCATATATCTTGTGTTCGAGTATATGGAACATGACATTACAGGGCTCATATCTTCCCCTGATATCAAGTTTAGTGAACCGCAGATTAAATGCTACATGAAGCAGTTGTTATCTGGACTTGACCATTGTCATTCGCGCGGTGTAATGCACCGTGACATCAAGGGATCTAATCTTCTAGTGAACAATGAAGGGATACTAAAGGTGGCTGATTTTGGACTGGCGAACTTTTCAAATCCTGGGCACAAACAGCCCCTCACTAGTCGTGTAGTTACATTGTGGTACCGTCCTCCTGAACTTTTACTGGGTTCAACAGACTATGGCCCTTCTGTGGATCTCTGGAGCATTGGCTGTGTATTTGCTGAACTACTTGTTGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTCTGTGGCTCTCCACCTGAAGAATACTGGAAAAAGTCTAGACTCCCTCATGCAACCTTGTTTAGGCCACAGCAACCATATAATAGTTGTCTCCGAGAGACCTTTAAAGATTTGCATCCAACTAGTGTGAACTTGCTACAGACTCTTCTTTCCATCGAACCATACAAACGTGGAACTGCCTCCTCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCATATGCTTGTGAACCATCAAGCTTGCCGGTATATCCACCTACCAAGGAGATTGATGTGAAACAGCGGGAAGAGTCAAGAAGGAAAAAGATTGGTGGAAGAGCACGTGGACATGAAGCAAGAAAACCTTCAAGAAAGCCAGTAGGATTCAACAAATTAGTCCCAACAGAGGATTTGGCAAGTCAAACCCAGAAATTCCAAAGGGTTAATGGCAGGTCAGTCCACATCCTTAAAGAAGGGAGCACCAATGTAGTTAAGGAGGAACCAAAGCCATCTAGTGGGAAACCAGATGATGCTTCCCATACGAAGAATGCATCTCAAGGAGATATTCCCTTTTCTGGGCCATTGCAAGTTTCCACATCAAGTGGCTTTGCATGGGCAAAAAGACGTAAAGATGACATTTCAACAAGATCCCACTGTCGATCTATTTCAAGGGGGCATATTGTCAATCCATTAGAGTCTTCTGTACCAAATTCAATGAAGAACTTCGATTCCAGAAACATGGAAAATAAGGATTGTCTGGGACGCTCCAACTCTCGGAGTCATGATCCACTTGAAATCCCTAAGCTTGCCATGCAAAATCAATGGAGCAAGTTTGATCGCCCAGATTCTTTTGATGCTTCTGACGAATACCACTCCCAGGAGCTATCCATGGCACTTTATCATAGAGAGGATTCAATATCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGCAGAGAAGGTTGAGTTTTCAGGGCCCCTGCTATCTCAAATGCATACTGTTGATGAGCTCTTGGAAAAACATGAGCGCCACATCCGCCGAACAGTCCGAAGATCTTGGTTTCAAAGAGGTAGGAAGCAAGGGAAGCAAGTGTAA 2058 0.4577 MGCVNAKQAVSVTPAIDHSGVFRGNAGTGNSGRNLVESDKKKKKSESVGLSRSEVGDSGRASSNGGCDSYSFRLGNLQKYVEGEQVAAGWPGWLTAVAGEAIQGWVPIRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLISSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNPGHKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSIGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSRLPHATLFRPQQPYNSCLRETFKDLHPTSVNLLQTLLSIEPYKRGTASSALSSEYFKTKPYACEPSSLPVYPPTKEIDVKQREESRRKKIGGRARGHEARKPSRKPVGFNKLVPTEDLASQTQKFQRVNGRSVHILKEGSTNVVKEEPKPSSGKPDDASHTKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDISTRSHCRSISRGHIVNPLESSVPNSMKNFDSRNMENKDCLGRSNSRSHDPLEIPKLAMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSISKRSNLSYQDQAEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQRGRKQGKQV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0088 685 MobiDBLite consensus disorder prediction 35 50 - -
Lele23g0088 685 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0088 685 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0088 685 MobiDBLite consensus disorder prediction 498 517 - -
Lele23g0088 685 FunFam probable serine/threonine-protein kinase At1g54610 196 436 - -
Lele23g0088 685 MobiDBLite consensus disorder prediction 417 432 - -
Lele23g0088 685 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Lele23g0088 685 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Lele23g0088 685 MobiDBLite consensus disorder prediction 471 517 - -
Lele23g0088 685 MobiDBLite consensus disorder prediction 411 456 - -
Lele23g0088 685 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Lele23g0088 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Lele23g0088 685 PANTHER CELL DIVISION PROTEIN KINASE 111 401 - -
Lele23g0088 685 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Lele23g0088 685 MobiDBLite consensus disorder prediction 481 497 - -
Lele23g0088 685 CDD STKc_CDK9_like 113 397 - -
Lele23g0088 685 MobiDBLite consensus disorder prediction 21 64 - -
Lele23g0088 685 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0088 685 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0088 Lele-ChrLele23 572662 577385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0088 105 429 Core Cell Cycle Gene Families AT5G10270 50.733 4.39e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele23g0088 Pkinase 2.1e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1925 21 26424647 26429409 Lele23g0088 23 572662 577385 hybridization
Lele22g1895 22 23741340 23746097 Lele23g0088 23 572662 577385 hybridization