Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0086 ATGTCGGACGAAGAACATCACTTTGAATCTAAGGCCGACGCCGGAGCCTCCAAGACTTATCCTCAACAAGCTGGCACCATTCGTAAAAACGGCTATATCGTCATCAAGAACCGCCCCTGCAAGGTTGTTGAAGTGTCGACCTCCAAGACCGGTAAGCATGGTCATGCTAAGTGCCACTTTGTTGCAATTGATATCTTCACTAACAAGAAGCTTGAAGATATTGTGCCCTCTTCCCACAACTGTGATGTTCCCCATGTGAACCGTACTGATTATCAACTCATTGATATTTCTGAGGATGGATTTGTTAGTCTGCTTACTGAAAATGGGAATACCAAGGATGATCTGAGGCTTCCTACCGATGAAAATCTGCTTAATCCGATAAAGGAAGGATTTGAGAGTGGAAAGGACCTTGTTGTTTCTGTCATGTCTGCTATGGGGGAGGAGCAGATTTGTGGCTTAAAGGATATTGGGCCAAAGTAG 480 0.4479 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLNPIKEGFESGKDLVVSVMSAMGEEQICGLKDIGPK 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0086 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Lele23g0086 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele23g0086 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele23g0086 159 CDD S1_eIF5A 86 156 - -
Lele23g0086 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Lele23g0086 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele23g0086 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele23g0086 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Lele23g0086 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Lele23g0086 159 Gene3D - 86 158 IPR012340 -
Lele23g0086 159 MobiDBLite consensus disorder prediction 1 21 - -
Lele23g0086 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele23g0086 159 Gene3D - 1 85 IPR014722 -
Lele23g0086 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0086 Lele-ChrLele23 556173 557402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0086 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.308 5.69e-104 292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0086 23 556173 557402 Lele23g0086 23 556173 557402 ECH
Lele21g1926 21 26440706 26441931 Lele23g0086 23 556173 557402 hybridization