Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0053 ATGCACAAATCGCCGCGGGAAAATGAAATGACATTTCAAAACCATTTCCCGCCTCAACTATTCACCCTCCAAAACCATTTCAAAACCATTCATCAATCAATACACCTGAACAGTGAACAGGCTAAGAATCCCGGAAAGACACAGAGAGAGAAAATGTCTCAGTCAGTGACTCCGGATGCGATTTCTATCTTGTATGCCAATCCGTCCCCGGATTCTTCACCGGAGCTTCCCAATACTGTAGTCCAAGTCCTGGATCTCAAGCAAAGCGGTAACAGATATATGTTTACTGCAAGCGATGGTAGGTTAAAATTAAGAGCAATTCTACCCTCAAGTCAGAATTCTCAGGTCCTCTCAGGAAATATTCAGAACCTGTGTCTTATTCGCATAATTGACTATACTCTCAACGACATCCCAAATAAGTCAGAGAAGTATCTTATTGTGACAAAATGTGAACCAGTCTCCCCTGCACTTGAAATGGAAATAAAGCTTGAGGTAAAGAGTCTCCCCTGCATTATTTCAAAACGAGTGCAAAAGGACGAAATGAAAAGTCAGGTGAAAACTGAAGGAGCAGGCCTTCTTTTGAAACCAAAGCAAGACATAGTGGCCAAATCTGCTGCTCAGATCGTACATGAACAACACGGAAATATGGTCCCTGCTGCTCGAATGGCCATGACTCGCAGGGTGCGTCCTCTGGTTTCCTTAAACCCTTATCAGGGTAACTGGACAATAAAAGTTCGGGTCACAAACAAAGGAATCATGCGCACCTATAAGAATGCAAGAGGGGAAGGTTGTGTCTTCAACGTGGAACTGACAGATGAAGATGGCACTCAAATTCAAGCAACAATGTTTAATGAAGCTGCAAGGAAATTCTATGAAAAATTTGGGTTGGGGAAGGTTTACTACATTTCAAAGGGTACTTTAAAAGTTGCTAGCAAGCAGTTTAAAACCGTTCAAAATGATTATGAAATGACACTAAACGAGAACTCTGAAGTGGAAGAGGCATTCGGTGAAGAAAGCTTTGTTCCAGAGACAAGGTTCAAGTTTGTCCCGATTGATCAGCTGGGTCCGTATGTCAACAGAAATGAACTTGTCGATGTCATTGGAATTGTTCAAAATGTATCTCCTACGATGAGCATACGCAGAAAGAGCAACAATGAAACTGTCCCGAAGCGTGATATCACTATTGCTGATGAGACAAAGAAAACAGTTGTTGTGTCTTTGTGGAATGAGAACGCGACTAATGTAGGGCAAGAATTGTTGGACCTTGCTGGTAGTTCTCCTTTAGTAGCAATCAAATCACTCAAGGTTGGGGACTTTCAAGGTGTTTCCTTATCAACTATAAATAAAAGTCTAGTGCTGGTAAATCCAGACATACCTGAAGCAAAGAAGCTTAGATGCTGGTACGAATCGGAAGGTAAAGATGTATCATTGGCATCCATAAGTTCTAGCACGAGTCAAGTATCCATGAATGGAGTGAGATCAGTGTATTCAGACCGTGTTTCACTTTCTCATATTACCTCAAACCCATCCTTAGGGGAGGACAAGCGTGCATTTTTCAGCATTAGGGCACATATAAGCTATATCAAGCCTGACCAGACAATGTGGTACCGAGCCTGTAAAACTTGCAACAAGAAAGTCACCGAATCCATTGGCGCTGGGTATTGGTGTGAAGGCTGCCAGAAAAATTATGAAGAGTGCAATTTAAGATACATTATGGTTGTACGAGTTACTGATAGAAGTGGGGAAGCCTTTGTCTCAGTCTTCAATGAAGAGGCTGAGAAGATTGTTGGGTGCTCTGCTGAAGAACTTGATAGCCTAAAGTCACAGGAGGGGGAAGATAATCCATATCAGTTGAAACTGAAACAAGCAACATGGACTCCTTATCTTTTCCGGGTCACTGTTTCTCAAAATGAGTATAATAATGAGAAAAGGCAAAGGATAACAGCCCGGGCAGTTGTTCCGATGGACTTTGCTGCTGAGTCAAGATTCCTCTTGGAAGAGATATCAAAGATGGCAGTTTCTCAATAA 2028 0.4206 MHKSPRENEMTFQNHFPPQLFTLQNHFKTIHQSIHLNSEQAKNPGKTQREKMSQSVTPDAISILYANPSPDSSPELPNTVVQVLDLKQSGNRYMFTASDGRLKLRAILPSSQNSQVLSGNIQNLCLIRIIDYTLNDIPNKSEKYLIVTKCEPVSPALEMEIKLEVKSLPCIISKRVQKDEMKSQVKTEGAGLLLKPKQDIVAKSAAQIVHEQHGNMVPAARMAMTRRVRPLVSLNPYQGNWTIKVRVTNKGIMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFGLGKVYYISKGTLKVASKQFKTVQNDYEMTLNENSEVEEAFGEESFVPETRFKFVPIDQLGPYVNRNELVDVIGIVQNVSPTMSIRRKSNNETVPKRDITIADETKKTVVVSLWNENATNVGQELLDLAGSSPLVAIKSLKVGDFQGVSLSTINKSLVLVNPDIPEAKKLRCWYESEGKDVSLASISSSTSQVSMNGVRSVYSDRVSLSHITSNPSLGEDKRAFFSIRAHISYIKPDQTMWYRACKTCNKKVTESIGAGYWCEGCQKNYEECNLRYIMVVRVTDRSGEAFVSVFNEEAEKIVGCSAEELDSLKSQEGEDNPYQLKLKQATWTPYLFRVTVSQNEYNNEKRQRITARAVVPMDFAAESRFLLEEISKMAVSQ 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0053 675 Gene3D - 482 671 IPR012340 -
Lele23g0053 675 SUPERFAMILY Nucleic acid-binding proteins 346 475 IPR012340 -
Lele23g0053 675 SUPERFAMILY Nucleic acid-binding proteins 497 671 IPR012340 -
Lele23g0053 675 Pfam Replication protein A OB domain 358 455 IPR031657 -
Lele23g0053 675 FunFam Replication protein A subunit 55 165 - -
Lele23g0053 675 FunFam Replication protein A subunit 483 671 - -
Lele23g0053 675 SUPERFAMILY Nucleic acid-binding proteins 229 335 IPR012340 -
Lele23g0053 675 FunFam Replication protein A subunit 227 336 - -
Lele23g0053 675 FunFam Replication protein A subunit 340 479 - -
Lele23g0053 675 PANTHER REPLICATION FACTOR A 1, RFA1 241 634 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele23g0053 675 SUPERFAMILY Nucleic acid-binding proteins 52 159 IPR012340 -
Lele23g0053 675 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 55 670 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele23g0053 675 CDD RPA1_DBD_B 363 469 - -
Lele23g0053 675 Gene3D - 55 163 IPR012340 -
Lele23g0053 675 Pfam Replication factor-A protein 1, N-terminal domain 56 153 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele23g0053 675 Pfam OB-fold nucleic acid binding domain 241 327 IPR004365 GO:0003676
Lele23g0053 675 Gene3D - 341 481 IPR012340 -
Lele23g0053 675 CDD RPA1_DBD_C 502 670 IPR013955 -
Lele23g0053 675 Gene3D - 227 335 IPR012340 -
Lele23g0053 675 Pfam Replication factor-A C terminal domain 518 664 IPR013955 -
Lele23g0053 675 CDD RPA1_DBD_A 230 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0053 Lele-ChrLele23 345705 349366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0053 52 675 Core DNA Replication Machinery Family AT5G08020 66.240 0.0 889