Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0040 ATGGCTTCACTTCAGCTTGAGCTCTTGAGGCCTTGCTCTGCTCAAAACTCTCAACTTTTCTTCTCTGCTTTCTCATGTGAGCTCAAAGCCATTCTGCACGCAGAAATTGAGTCTATGGCGAAATCATTTACTGGATCTGTTGCCTCCGCTCTCTTGCTCGCATTTCTCTTCCTTTGCTTCATATTCACCTCCACAGAAGCCTATGATCCCCTCGATCCAAGTGGAAACATAACAATCAAATGGGATGTCATAAGCTGGGCCCCAGATGGCTATGTTGCCGTGGTTACAATGTACAACTTTCAACAGTACCGGCACATTCAGGCCCCTGGGTGGACATTGGGATGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAAGCCAAACCACCGAGCAAGGGGACTGCTCAAAGTTCAAAGGGAATCCCCCGCATTGCTGCAAGAGGGATCCAACGGTGGTGGATCTACTTCCTGGAACTCCGTACAATCAGCAGATTGCAAATTGCTGCAAAGGGGGAGTATTGAACTCATGGGCTCAGGACCCAGCCACAGCAATAAGTTCATTTCAGGTCAGTGTTGGCCTTGCTGGAACAACCAACAAAACTGTCAAGTTGCCTAGAAATTTCACCCTTAAAGCACCGGGGCCTGGATACACTTGCGGTCCTGCAAAGATTGTGAAACCAACCAAGTTTACAACTAATGACAAAAGGAGAACCACTCAAGCATTGATGACCTGGAATGTTACCTGCACGTATTCTCAGTTCCTTGCTCAAAAGACCCCAAGTTGCTGTGTTTCTCTTTCATCCTTCTATAATGATACTATAGTGAACTGCCCAACCTGCACATGTGGCTGTCGAAACAAAACAGAACCCGGGAGCTGTGTGGATCCAAATTCCCCACATTTGACCCCAGTTGTAGCGTCTTCCGGCAAAGCTAGTAATACACCCCTTGTCCAGTGCACCAGCCATATGTGTCCAATTCGAGTGCATTGGCATGTGAAGGTCAATTATAAAGAGTACTGGAGAGTGAAGATCACAGTCACAAATTTCAATTACAGGATGAACTATACACAATGGAACCTTGTTGTGCAGCACCCCAATTTTGACAATCTGACCCAGCTTTTCAGCTTTAATTACAAGCCATTAACGCCTTATGAGGGCTTGAATGATACTGGCATGCTATGGGGATTGCAGTTCTATAACGATTTGCTGGCATCAGCTGGAGAATTTGGGAATGTACAGTCAGAGCTCTTATTTAGAAAGGATGCATCAACCTTCACATTTGACAAGGGTTGGGCTTTTCCCAGGAGAATTTATTTCAATGGAGATAACTGCGTTATGCCTCCTCCTGATGCCTACCCATGGCTGCCAAATGCAACCACAAAACTAAATTTCTCCCTCCTAAGTACAGCCATATCTGCCTTTGTTTCTTTGGTAATTTTATTGGCTAATTTATAG 1461 0.4538 MASLQLELLRPCSAQNSQLFFSAFSCELKAILHAEIESMAKSFTGSVASALLLAFLFLCFIFTSTEAYDPLDPSGNITIKWDVISWAPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWNMMGSQTTEQGDCSKFKGNPPHCCKRDPTVVDLLPGTPYNQQIANCCKGGVLNSWAQDPATAISSFQVSVGLAGTTNKTVKLPRNFTLKAPGPGYTCGPAKIVKPTKFTTNDKRRTTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCTCGCRNKTEPGSCVDPNSPHLTPVVASSGKASNTPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYTQWNLVVQHPNFDNLTQLFSFNYKPLTPYEGLNDTGMLWGLQFYNDLLASAGEFGNVQSELLFRKDASTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNATTKLNFSLLSTAISAFVSLVILLANL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0040 486 PIRSF COBRA 39 486 IPR006918 GO:0010215|GO:0016020
Lele23g0040 486 Pfam COBRA-like protein 91 254 IPR006918 GO:0010215|GO:0016020
Lele23g0040 486 PANTHER PROTEIN COBRA 56 472 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0040 Lele-ChrLele23 251589 254497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0040 50 486 COBRA Gene Family AT3G02210 74.658 0.0 712
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0713 19 4137402 4139414 Lele23g0040 23 251589 254497 CCT
Lele20g0744 20 14442768 14446879 Lele23g0040 23 251589 254497 CCT
Lele23g0040 23 251589 254497 Lele23g0040 23 251589 254497 ECH
Lele21g1974 21 26718368 26724709 Lele23g0040 23 251589 254497 hybridization
Lele22g1937 22 24067879 24070693 Lele23g0040 23 251589 254497 hybridization