Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0023 ATGGGGTGCTCGTTTTCTGGGTTGAATGCATTGTATGACAACGTAAACGGTGGCACCGAGGTGTGGATCAACGAGAACCGATTCCGCATCGTGAGGCAGCTCGACGAAGGTGCCTTTTCGTACGTCTACTTGGTCAAGGAGGTGGTCACCGACTCCTCTCCCGCCTTAGCTGGCGGGGGTCTCTCAAAGAAGATCAAAGACTCTTCCCATGTTTCCGACGATGGAACTTATGCTATGAAAAAGGTCTTCATTCAAAACAATGAACAGCTGGAGTTGGTGAAGGAGGAGATCCATGTTTCATCACTCTTCAGTCATCCTAATTTGCTTCCACTTATTGATCATGCAATCATTTCTGTTAAGCCAACCAAAGAAACATCTTGGGACCATGAAGCATATCTGTTATTTCCTGTTCATTTGGATGGAACATTGCTTGACATTGCCCAAACAATGAAAGCCAAGAAAGAGTTCTTTACCACGTCAGATGTGCTTTACATATTTCAGCAGCTTGCTGCAGGACTCAAGCACATGCACAATATGGATCCTCCGCATGCACATAATGATGTCAAACCTAGTAATGTGGTAATAACACGCAGTAAAGGACAACCACCTCTTGCCATACTCATGGACTTTGGTAGCGCTCGACCTGCCAGGCGTCAAATTCGCTCCCGATCAGAGGCTCTACAGTTGCAGGAATGGGCAGCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTATGGGATTGCCCAAGCCATTCTGATATAGATGAGAGGACTGATGTTTGGTCACTAGGATGCACGCTGTATGCAATAATGTACGGGGTATCTCCTTTTGAATATGCTCTTGGAGAATCTGGGGAAAGCCTGCAATTGACCATTGTAAATGCTCAGATCAAATGGCCGGCTGGACCCAAGTCTCCATATCCTGATGCTCTTCATCAGTTCGTGACATGGATGCTTCAACCTCAGGCTGCTGTGCGGCCTCGAATAGACGATATCGTTATCCATGTTGGAAAATTGATCGCCAAGACAGATTTTGGATATTGCTGTGAATTTGGAGATGATTGGGATGTACATGAAACTTTATTTGACATAATTTCAATACCTGTCTCTGGAAATGTGGAGTTTGTGACATGAAATACTGTAAAGAGATGGACTGTTGGAATATCAGGGGGTAAAGACCTGAGAAGATTCGCAAAAGAGGACGTGGAGAGAAATCAGACGCTTGGCTGCCTCGAAACCAGTCATCACCTCATTGATGTTGCTGCAAGTGGAGGAAAATTTGACTTGGGGAAACTGTATGAGAAGATTGGCTTCAACAAGGAAATTATATCAAGGGGAAATATGCTGAGGTCCTTGCTGCTGAACAACGTCCTTTCAGGGCTTGAAGCTGCTGGGCCTAAGGTGTTACAGAAGATGGAGGAGGTTGCACAGGGGAGAGTTTGGACTGGTAAAGACGCAGCTTCCCATGGTTTAGTTGATGCTATTGGCAGGCTTTCTCGAGCTATTGCCATAGCGAAATTGAAGGCTAATATACCTCAAGACAAAGAGGTTACTCTAATGGAACTTTCCCGACCTTCTCTTGCAGAGATTTTAAGTGGTGCAGGGAATGCCCTAGTTGAAGTAGATAATACATTGAAGGAACTGCTTCAGGACTTGGCATTTTCTGATGGAGTTCAAGCCCGGAAGGACGGAATCATGCTTGAGAGATTGGAAGGATGTGCTCTCCCCAACCCCATTTTGAGGCAGATGAAGGAGTTCCTTAGTTCCACGTAG 1776 0.4578 MGCSFSGLNALYDNVNGGTEVWINENRFRIVRQLDEGAFSYVYLVKEVVTDSSPALAGGGLSKKIKDSSHVSDDGTYAMKKVFIQNNEQLELVKEEIHVSSLFSHPNLLPLIDHAIISVKPTKETSWDHEAYLLFPVHLDGTLLDIAQTMKAKKEFFTTSDVLYIFQQLAAGLKHMHNMDPPHAHNDVKPSNVVITRSKGQPPLAILMDFGSARPARRQIRSRSEALQLQEWAAEHCSAPFRAPELWDCPSHSDIDERTDVWSLGCTLYAIMYGVSPFEYALGESGESLQLTIVNAQIKWPAGPKSPYPDALHQFVTWMLQPQAAVRPRIDDIVIHVGKLIAKTDFGYCCEFGDDWDVHETLFDIISIPVSGNVEFVTXNTVKRWTVGISGGKDLRRFAKEDVERNQTLGCLETSHHLIDVAASGGKFDLGKLYEKIGFNKEIISRGNMLRSLLLNNVLSGLEAAGPKVLQKMEEVAQGRVWTGKDAASHGLVDAIGRLSRAIAIAKLKANIPQDKEVTLMELSRPSLAEILSGAGNALVEVDNTLKELLQDLAFSDGVQARKDGIMLERLEGCALPNPILRQMKEFLSST 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0023 591 Gene3D - 440 559 - -
Lele23g0023 591 Pfam Protein kinase domain 58 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0023 591 SMART serkin_6 28 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0023 591 Gene3D Phosphorylase Kinase; domain 1 11 136 - -
Lele23g0023 591 SUPERFAMILY Protein kinase-like (PK-like) 19 336 IPR011009 -
Lele23g0023 591 Gene3D Transferase(Phosphotransferase) domain 1 139 346 - -
Lele23g0023 591 CDD STKc_16 27 342 - -
Lele23g0023 591 ProSiteProfiles Protein kinase domain profile. 28 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g0023 591 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0023 Lele-ChrLele23 135338 145414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0023 33 299 EF-hand Containing Proteins AT4G04710 24.627 4.40e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lele23g0023 Pkinase 1.7e-29 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0023 23 135338 145414 Lele23g0023 23 135338 145414 ECH
Lele21g1989 21 26828752 26839159 Lele23g0023 23 135338 145414 hybridization
Lele22g1956 22 24209135 24213036 Lele23g0023 23 135338 145414 hybridization