Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0014 ATGGAAAACCTAGAGATCTCATCAGAATGTCCACTTTCTTCTCAAGAGTCAAACAAAAGTCAATCTTTACTGCCTCGTGAATCAGGTAATAAGCCGTGTGTGAGCACAGAGAGGAGGATAACAAAGGTTCCAAGAAGAACAGACAGGAGGGTAAATGAGAGAAAGTACATCGGGGTGAGACAAAGGCCTTCAGGAAGGTGGGTCGCTGAGATCAAGGACTCCTCACAGAAGCTGAGGCTTTGGCTGGGAACGTTTGACAGAGCAGAAGATGCTGCTATGGCTTATGATTGTGCTGCCAGGCTTCTAAGAGGAAGAAATGCCAAGACAAACTTCCAGTGGCCGATCTCCAAAACACACGAGGAAATTTGCAGCTTTTTGCGTAAGAATCCGAGGGCTTACCAGATTCTGAAGCATGCAGTCATGAAAAACCATCATGCAGTTCTTTCTTCCAGGGCCATGCCTTGGAAGAACCAGATCAGTAATATGACAAGAGACGGATTCGACACCCTTGTGGAAGAAACCATAGTTTGCTGTTCCACTAGTTCTGAAGAAGGTTCTTCATCTTCTTCTGGATGCTGTGGGGTGTCATTTGGGAGTTCTAAGGTATATTCTTCTGTTGTTGTGGCTCCTTCTTTCAGCGCCTCATTTTGTGAGACAGATGATGGTCAGGAAGAAGCCCCTTAA 684 0.4576 MENLEISSECPLSSQESNKSQSLLPRESGNKPCVSTERRITKVPRRTDRRVNERKYIGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRAEDAAMAYDCAARLLRGRNAKTNFQWPISKTHEEICSFLRKNPRAYQILKHAVMKNHHAVLSSRAMPWKNQISNMTRDGFDTLVEETIVCCSTSSEEGSSSSSGCCGVSFGSSKVYSSVVVAPSFSASFCETDDGQEEAP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0014 227 MobiDBLite consensus disorder prediction 1 29 - -
Lele23g0014 227 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Lele23g0014 227 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Lele23g0014 227 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Lele23g0014 227 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Lele23g0014 227 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Lele23g0014 227 MobiDBLite consensus disorder prediction 1 37 - -
Lele23g0014 227 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Lele23g0014 227 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Lele23g0014 227 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Lele23g0014 227 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 152 - -
Lele23g0014 227 SMART rav1_2 55 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0014 Lele-ChrLele23 83428 84111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0014 52 111 AP2-EREBP Transcription Factor Family AT5G19790 70.000 5.23e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele23g0014 AP2 5.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0014 23 83428 84111 Lele23g0014 23 83428 84111 ECH
Lele21g1999 21 26887509 26888159 Lele23g0014 23 83428 84111 hybridization
Lele22g1966 22 24265106 24265801 Lele23g0014 23 83428 84111 hybridization