Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0002 ATGAGGGAGAATATGAGCTGGCGGAGAGTATTGAAGTCGGCGCAGGCCCTCGCTGCCCATACCCTTCTCTTCTGCTTCACCCTTCTTCTCGTCTTCAAGCTCGATCACGTTGTCTCCTGCTCTTGGTGGATAGTATTTTTTCCACTATGGATGTTTCATGCTGTTGTGGCTCGAGGAAGGTTCTCATTACCTGCCCCATCAGTTCCACGTAATCGACATTGGGCACCATGCCATGCCGTTGTTGCAATACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATACCTGGAGAGCTTATGCGTTCAAGGTTTTGCAGCTGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATAATTATTCTAATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGATAACATGAATGATGAGGCAATATGGGAAACACTTCCTCACTTTTGGGTTGCTATCTCAATGGTCTTCTTTGTTGCTGCTACAGTTTTCACACTCTTAAAACTGTGTGGTGATGTAGGTGCTCTTGGCTGGTGGGACTTGTTTATAAACTTTGGTATTGCCGAGTGCTTTTCCTTTCTTGTATGTACAAAGTGGTCGAATCCAATAATTCATAGAAATTCTCGCTCAAGAGAAGCCAGTTCATCTTCTAGTACGATTAGATATCTTGACTGGAATAGTGGCTTAGTAGTTTCGTCAGAGGACAATCCACATCAAGAGAGAATGTGTGGCCTACAAGACATAGGAGGTCACTTCATGAAGGTTCCAGTTATTGGATTCCAGATTCTTCTTTGTATGCGTTTAGAGGGAACACCTGCTACTGCTAGACATATCCCACTTTTAGTTCTCTTTTCCCCACTTTTTCTACTGCAAGGTGCTGGTGTACTGTTTGCTGCGTCTAAGTTGGTGGAGAAAATTATACTTCTGCTACGTAGTGGAGCTGGTGGGGGAATATATTTTAGATTTTCATCAAGAGTTCATGATTGGTTGGGGTTTTTGCACCATGGTTCAAGGTTATTGGGTTGGTGGTCCATTGATGAAGGGAGTCGAGAAGAACAGGCACGATTGTTCCAAGAGAGGGCCTCTGGGTATAACACTTTCAGTGGTTATCCTCCTGATGTTGTTAAGAAAATGCCTAAAAAGGATCTTGCCGAGGAGGTCTGGAGACTCCAGGCAGCGCTTGGGGAGCAAACAGAAATTACAAAACACAGTCAACAAGAGTTTGAAAGACTTCAGAATGAGAAAGTGTTGTGCAGAATTTGTTTTGAGGGGGAGATTAGCATTGTATTGCTACCTTGCAGGCACCGAATCCTCTGCAGCGCTTGCTCTGAGAAGTGTAAGAGGTGCCCAGTTTGCCGGATCTCAATTGAGGACTTATTACCTGTATATGATGTTTAG 1416 0.4357 MRENMSWRRVLKSAQALAAHTLLFCFTLLLVFKLDHVVSCSWWIVFFPLWMFHAVVARGRFSLPAPSVPRNRHWAPCHAVVAIPLLIAFELLLCIYLESLCVQGFAAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEDNMNDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGDVGALGWWDLFINFGIAECFSFLVCTKWSNPIIHRNSRSREASSSSSTIRYLDWNSGLVVSSEDNPHQERMCGLQDIGGHFMKVPVIGFQILLCMRLEGTPATARHIPLLVLFSPLFLLQGAGVLFAASKLVEKIILLLRSGAGGGIYFRFSSRVHDWLGFLHHGSRLLGWWSIDEGSREEQARLFQERASGYNTFSGYPPDVVKKMPKKDLAEEVWRLQAALGEQTEITKHSQQEFERLQNEKVLCRICFEGEISIVLLPCRHRILCSACSEKCKRCPVCRISIEDLLPVYDV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0002 471 Pfam Transmembrane Fragile-X-F protein 33 296 IPR019396 -
Lele23g0002 471 Pfam Zinc finger, C3HC4 type (RING finger) 421 464 - -
Lele23g0002 471 ProSiteProfiles Zinc finger RING-type profile. 424 459 IPR001841 -
Lele23g0002 471 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 5 471 - -
Lele23g0002 471 SMART ring_2 424 458 IPR001841 -
Lele23g0002 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 469 IPR013083 -
Lele23g0002 471 FunFam Kinesin-like protein KIN-7D, mitochondrial 401 469 - -
Lele23g0002 471 SUPERFAMILY RING/U-box 415 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0002 Lele-ChrLele23 9298 23953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0002 5 471 C3H Transcription Factor Family AT1G73950 70.878 0.0 672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0002 23 9298 23953 Lele23g0002 23 9298 23953 ECH
Lele21g2015 21 26979817 26989227 Lele23g0002 23 9298 23953 hybridization