Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1970 ATGGCCGAACCAGAAGACAAGCGTCATGCATCCCTCGAGGAAGGGAAGAAGAGGAAGAGGAAAAGGAATAGACCGCGGAAATATGCAGCTGAGGAGCAGTTGGACCCTCAAGAGTCAAACCGGCATGGGGAGGACGAAGGCGAAGAAGCGCGAGAGAATAGTGGGGATAAGGAGTCTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGGGGAAGCGCGGTGAAGGAGTGAGTGAAGGGGACAAGGGTGGCGATGAGAATGAGGAGGAGGAGGAGGTCGAACGAAGGAAGTTAAAGAATGTTGGGTCTGGAATTATGAGCACTGTATCGTTTGATTCTCTGGGATTGTCTGAACCTACTTTTAAGGCCATTAAGGATATGGGATTTGAGCATACAACTCAGATTCAAGCTAGAGCAATCCCGCCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCGAGGACGGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCACGAAATGGAACTGGTGTCGTTGTCATATGCCCTACTAGGGAGCTTGCAATACAGACACATGCTGTAGCGAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTAAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAGGCAGATTATTAAAATCTTACCGAAGAATAGGCAAACAGCTTTGTTTTCAGCCACCCAAACAAAGAAGGTTGAGGATCTTGCCCGCATTTCTTTTCAGACAACTCCTATCTATGTTGATGTGGATGATGGGAGGACCAAGGTTACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTGTGCCAAGCGTTTTGTTGTTCTCTACTCCTTCTTGAAGAGATATCACTCAAAAAAAAAGATGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTTCATGCAGACCTTCTCAATTACATACAGATTGATTGCTTTAATATACATGGAAAACAAAAGCAGCAGACACGCACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACCGATGTTGCTGCCCGTGGGCTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGGTATCTAAAGGCAGCGAAGGTTCCTGTAAAAGAATATTTGTTTGATGAAAAGAAGATGTCAAATGTACAATCTCACCTGGAAAAGTTGGTGGGTAACAATTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATCATATATTCTAGCGTATAATTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGACTTACAGGCTGTGGCAGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTTTAGGCATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAGGTTGAAGGAGGCAGACTTGGATTCAGCGACAGCAATCCTTATGGTAACAAAATTGCTGCAGATGATAACCGCCAATTTGTGAGGCATTAG 1797 0.4346 MAEPEDKRHASLEEGKKRKRKRNRPRKYAAEEQLDPQESNRHGEDEGEEARENSGDKESAELRKKKKDKKGKRGEGVSEGDKGGDENEEEEEVERRKLKNVGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMRQIIKILPKNRQTALFSATQTKKVEDLARISFQTTPIYVDVDDGRTKVTNEGLQQGYVLVPCAKRFVVLYSFLKRYHSKKKMMVFFSSCNSVKFHADLLNYIQIDCFNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYLFDEKKMSNVQSHLEKLVGNNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSSASKHRKKMRKVEGGRLGFSDSNPYGNKIAADDNRQFVRH 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1970 598 PANTHER RNA HELICASE 60 495 - -
Lele22g1970 598 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Lele22g1970 598 CDD DEADc_DDX18 120 317 IPR044773 GO:0003724|GO:0005524
Lele22g1970 598 Pfam DEAD/DEAH box helicase 133 304 IPR011545 GO:0003676|GO:0005524
Lele22g1970 598 SMART DUF4217_3 491 554 IPR025313 -
Lele22g1970 598 MobiDBLite consensus disorder prediction 26 65 - -
Lele22g1970 598 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 500 IPR001650 -
Lele22g1970 598 MobiDBLite consensus disorder prediction 1 96 - -
Lele22g1970 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 465 IPR027417 -
Lele22g1970 598 SMART ultradead3 128 333 IPR014001 -
Lele22g1970 598 Pfam Helicase conserved C-terminal domain 345 450 IPR001650 -
Lele22g1970 598 SMART helicmild6 370 451 IPR001650 -
Lele22g1970 598 Gene3D - 326 569 IPR027417 -
Lele22g1970 598 Pfam Domain of unknown function (DUF4217) 492 552 IPR025313 -
Lele22g1970 598 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Lele22g1970 598 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 315 IPR014001 -
Lele22g1970 598 Gene3D - 86 321 IPR027417 -
Lele22g1970 598 CDD SF2_C_DEAD 330 461 - -
Lele22g1970 598 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 316 IPR027417 -
Lele22g1970 598 FunFam RNA helicase 326 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1970 Lele-ChrLele22 24291694 24296620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1970 110 469 Eukaryotic Initiation Factors Gene Family AT3G13920 30.748 3.77e-46 166