Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1968 ATGCTACCGTTGACGTGCTCCCTCGCGCGTAGAAAGATAACCTCAACGCGCCTTGGAGAGTTCGGTTGCCCTAAGCGCGTGCGAGAGAGAACTAGTTTCGTCGTCGTCTATTTGCGCGTTCGGCTGTTTCAGGTTCTCCATCCTCATCGGTTGGACCCCTTAAGTGAAACGATGGACCCAATGGACATCATTGGGAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACTATGACAAAAATTATTAAAGAAATGTTACCCCCGGATGTACGTGTTGCAAGAGATGCTCAAGATCTGTTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTGTCATCTGAGTCCAATGAAGTCTGCAGCAGAGAGGAGAAAAGGACAATTGCACCTGAGCATGTATTGAAGGCTTTAGAGGTTCTTGGATTTGGTGAGTATATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATTGAGACCATGCAGGACTCTCTAAAAGGAGGGAAATGGAGCAATGTAGCAGAAATGACGGAGGAGGAAGCTTTAGCGGAGCAGCAAAGGATGTTTGCGGAGGCACGTGCCAGAATGAATGGTGAGGCCATTGCTTCGAAGCAGCCAGATACTGACCAGAGTTTAGAGAGCTGA 642 0.4673 MLPLTCSLARRKITSTRLGEFGCPKRVRERTSFVVVYLRVRLFQVLHPHRLDPLSETMDPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNVAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDTDQSLES 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1968 213 Coils Coil 172 192 - -
Lele22g1968 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 71 136 IPR003958 -
Lele22g1968 213 Gene3D Histone, subunit A 61 203 IPR009072 GO:0046982
Lele22g1968 213 FunFam Negative cofactor 2 beta 63 200 - -
Lele22g1968 213 PANTHER PROTEIN DR1 HOMOLOG 58 212 IPR044255 -
Lele22g1968 213 SUPERFAMILY Histone-fold 69 200 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1968 Lele-ChrLele22 24282712 24285443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1968 58 209 CCAAT-DR1 Transcription Factor Family AT5G23090 82.468 1.41e-90 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele22g1968 CBFD_NFYB_HMF 1.1e-21 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1968 22 24282712 24285443 Lele22g1968 22 24282712 24285443 ECH
Lele22g1968 22 24282712 24285443 Lele23g0010 23 61781 64955 hybridization
Lele22g1968 22 24282712 24285443 Lele24g1919 24 23850779 23854301 hybridization