Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1966 ATGGAAAACCTAGAGATCTCATCAGAATGTCCACTTTCTTCTCAAGACTCAAACAAAAGCCCATCTTTAATGCCTCGTGAATCAGGTAATAATAAGCCCTATGTGAGCACAGAGAGGAGGATAACGAAGGTTCCAAGTAGAACAGTCAGGAGGGTAAATGAGAAAAAGTACCTCGGGGTGAGACAACGGCCTTCAGGAAGGTGGGTCGCTGAGATCAAGGACTCCTCACAGAAGCTAAGGCTTTGGCTGGGAACTTTTGACAGAGAAGAAGATGCTGCTATGGCTTATGATTGTGCTGCCAGGCTTCTAAGAGGAAGAAATGCCAAGACAAACTTCCAGTGCCCTTCAGGGACGATCTCCAACACACACGAGGCTACTTGCAGCTTTTTGCATAAGAATCCGAGGGCCTACCAGATTCTGAAGCATGCAATCATGAAAAACCATCATGCAGTTCTTTCTTCCACTGCCATGTCTTGGAAGAACCAGATCAGTAGTATGACGAGAGAAGGATTCGAAGCGCTTGTTGAAGAAACCATAGTTTGCTGTTCCACTAGTTCTGAAGAAGGTTCTTCATCTTCTTCTGGGTACTGTGGGGTGTCATTTGGGAGTTCTAAGGTTTATTCTTCTGTTGTTGTGGCTCCTTCTTTCAGCGCCTCATTTTGTGAGAAAGACGATGGTCAGGAAGAAACCCCTTAA 696 0.454 MENLEISSECPLSSQDSNKSPSLMPRESGNNKPYVSTERRITKVPSRTVRRVNEKKYLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDREEDAAMAYDCAARLLRGRNAKTNFQCPSGTISNTHEATCSFLHKNPRAYQILKHAIMKNHHAVLSSTAMSWKNQISSMTREGFEALVEETIVCCSTSSEEGSSSSSGYCGVSFGSSKVYSSVVVAPSFSASFCEKDDGQEETP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1966 231 FunFam ethylene-responsive transcription factor RAP2-11 55 114 - -
Lele22g1966 231 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 156 - -
Lele22g1966 231 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Lele22g1966 231 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Lele22g1966 231 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Lele22g1966 231 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Lele22g1966 231 Pfam AP2 domain 56 105 IPR001471 GO:0003700|GO:0006355
Lele22g1966 231 MobiDBLite consensus disorder prediction 1 37 - -
Lele22g1966 231 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Lele22g1966 231 MobiDBLite consensus disorder prediction 1 41 - -
Lele22g1966 231 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Lele22g1966 231 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1966 Lele-ChrLele22 24265106 24265801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1966 53 112 AP2-EREBP Transcription Factor Family AT5G19790 68.333 3.72e-24 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele22g1966 AP2 2.9e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1966 22 24265106 24265801 Lele22g1966 22 24265106 24265801 ECH
Lele22g1966 22 24265106 24265801 Lele23g0014 23 83428 84111 hybridization
Lele22g1966 22 24265106 24265801 Lele24g1916 24 23828644 23829333 hybridization