Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1956 ATGGGGTGCTCGTTTTCTGGGTTGAATGCATTGTATGACAACGTAAACGGTGGCACCGATATGTGGATCAACGAGAACCGATTCCGCATCGTGAGGCAGCTCGGCGAAGGTGCCTTTTCCTACGTCTACGTGGTGAAGGAGGTGCTCACCGACTCCTCTCCCGCCTTAGCTGGCGGTGGTCTCTCTAAGAAGCTCAAAGACTCTTCCCATGTTTCCTACGATGGAACTTATGCTATGAAAAAGAAGAAGTGCTTTTTGTTGGCAGCCATATTTCCTGTTCATTTGGATGGAACATTGCTTGACATTGCCCAAACTATGAAAGCCAAGAAAGAGTTCTTTTCCACGTCAGATTTGCTTGACATATTTCAGCAGCCTGCCGCAGGACTCAAGCACATGCACAATATGGATCCTCCGCATGCACATAATGATGTCAAACCTGGTAATGTGGTAATAACATGCAGTAAAGTACAACCACCTCTTGCTATACTCATGGATTTTGGTAGTGCTCGACCTCCCAGGCGGCAAATTCGCTCCCGATTAGAGGGTCTAAAGTTGCAGGAATGGGAAGCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTATGGGATTGCCCAAGCCATGTAGATATAAATGAGAGGACAGATGTTTGGTCACTAGGATGCACGCTGTACGAGGTATCTCCATTTGAATATGCACTTGGAGAATCTGGGGGAAGCCTGCAATTGGCCATGGTAAATGCTCAAGTCAAATGGCCGGCTGGACCTAAGTCTCCATATCCTGATGCTCTTCATCAGTTCGTGACATGGATGCTTCAACCTCAGGCTGCTGTGCGGCCCCGAATAGATGATATCGTTATCCATGTTGAAAAATTGATCACCAAGTTCTCTCATTGA 897 0.4738 MGCSFSGLNALYDNVNGGTDMWINENRFRIVRQLGEGAFSYVYVVKEVLTDSSPALAGGGLSKKLKDSSHVSYDGTYAMKKKKCFLLAAIFPVHLDGTLLDIAQTMKAKKEFFSTSDLLDIFQQPAAGLKHMHNMDPPHAHNDVKPGNVVITCSKVQPPLAILMDFGSARPPRRQIRSRLEGLKLQEWEAEHCSAPFRAPELWDCPSHVDINERTDVWSLGCTLYEVSPFEYALGESGGSLQLAMVNAQVKWPAGPKSPYPDALHQFVTWMLQPQAAVRPRIDDIVIHVEKLITKFSH 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1956 298 SMART serkin_6 28 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele22g1956 298 Pfam Protein kinase domain 97 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele22g1956 298 ProSiteProfiles Protein kinase domain profile. 28 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele22g1956 298 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 84 - -
Lele22g1956 298 SUPERFAMILY Protein kinase-like (PK-like) 21 288 IPR011009 -
Lele22g1956 298 Gene3D Transferase(Phosphotransferase) domain 1 14 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1956 Lele-ChrLele22 24209135 24213036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1956 123 274 MAP Kinase Kinase Kinase AT1G49160 27.451 1.28e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Lele22g1956 Pkinase 1.5e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1956 22 24209135 24213036 Lele22g1956 22 24209135 24213036 ECH
Lele22g1956 22 24209135 24213036 Lele23g0023 23 135338 145414 hybridization
Lele22g1956 22 24209135 24213036 Lele24g1908 24 23778870 23786204 hybridization