Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1949 ATGAAAATCCGATCGGTGAAGCTGAGGGAAGCCCACCAGGCAGCTAGCAACGGCCGCCCTTCTTTCTGCTCCGTCTTGTGGGACCAGCAAGCTCAACACCTTGTCACTGCATGCTTTTCCGACGTCTCCATTTCAATCCACGATCCTCTGCTTCTTTCATCTCCTCCGAAGGTTCTCACTCACCACCGCGATGGTGTCACCGCTTTGGCTCTTAGCCCCAACTCTACATGTCTTGCATCCGGATCCGTCGATCACTCCGTGAAGCTCTACAAGTTCCCGGGTGGAGAGTTCCAGACCAATATTACCAGGTTTACACTTCCCATACGTTCACTTGCATTTAATAAATCAGGGAGTTTGTTAGCAGCAGCTGGTGATGATGAGGGCATTAAGCTTATCAATACAGTTGATGGTTCTATAGCTCGGGTTCTCAAAGGGCATAAAGGGACTGTCACGGGCTTAGCTTTTGACCCCAATGGTGAATACTTGGCATCTATAGATTCATCTGGAACTGTTATTTATTGGGAACTTCACTCAGGTAGAATAGTTCATAACCTCAAAGGCATTGCTCCTGACACAAGAGCAGATGTATCTTCTATGAATGTTATTTGCTGGAGTCCTGATGGTGAGACATTGGCTGTTCCGGGGTTAAAAAATGATGTTGTGATGTATGATAGGGATACTGCTGAAAAGTTGTTTTCATTGAAGGGCGATCATACACAACCCATATGTTTCTTGTCTTGGTCACCCAATGGCAAGTACATGGCTACTTCTAGCTTAGATAGGCAGGTTCTAATTTGGGATGTCAATAGGAGGCAGGATATTGATAGGCAAAAATTTAATGAAAGAATATGTTGCATGGCTTGGAAGCCTATAGGTAATGCGTTAGCTGTTATTGATGTCATGGGGAAGTTTGGTATCTGTGATTCTGTTATTCCTTCATCCATGAAATCCCCAACAGAGGATATTCCCATGCAATCTAAGAATAGTAATGGGCTTCTTTTCTTTGATGAGGAGGATCTGGACCTTTGTGCAAGTGGAAGTATAAGTAATCTTGGTGAAGATAGCGATGGAGAGTCTGAACCACCTAGGATGAAAAGACTACGTGAACAGCCTTTGAGTGAGGAAAACTTTGACGAGGATGGCAGTGACGAAATGGCTTTACATCCAAAGGTTGAATCTCATAAAAAACCAAATCGCACGCATAAAGAAAATTTAAACAGTGTGAATGTGGGACATAAAAGCTCAATCATAACATGCAAACCAAAGATGCAAGAGGCATTTCAACCAGGATCAACTCCTACACAGCTCGGGAAAAGGCGCTTTTTGTGCTACACTATGCTTGGAAGTATAACCACAATTGAACATGATGTATACTTCCACATAGAGATTGATTTTCATGATACTGGCAGCAGTCCGAGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCCTTAAATGAGAATGGGAGTGTCTTTGCGAATCCTTGCAAGGGGGAGAAGAACATGAGCACTCTCATGTATCGTCCATTTAGTAGTTGGGCAAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTAAAGGTTGTGGCTCTTGGTACTGCTTGGGTGGCTGCCGCAACTAGTTTTAACTATCTTCGTATATTTACAGACGGTGGTTTGCAGAGAAATATTATTTCGCTGGATGGGCCAGTGTTGACTGCCTCAGGTTTCAAGGATAAATTGGCAGTTGTTACTCAGGCCTCTGCTTGTGTTTCCTCAAATGATCAGGTGCTAGAGTTTAGAGTGTTTAACATACCGAATGAAACCCAGCTCCTTACAGGCCGCTTGCCATTGACTCCTGGTTCATCTCTAACATGGTTTGGATTTAGTGAAGAAGGCCAATTGAGTTCCTATGATTCCAAGGGCGTGCTCAGAGTGTTTACAAGTCAGTATGAAGGTAGCTGGCTCCCACTTTTTAGTAAAGAGAAAGATGAAAACTATTGGGTTGTGGGGTTAAATGCAAGCAAGTTATTTTGTGTGATATGCAAGAAACCTGACACCTTCCCACAGGTGATGCCTAAACCGGTTCTCACCCTACTGAATCTTTCGTTCCCTCTTGCTTCCTCTGATCTGGGATCGGAAGCCCTTGAGAATGAGTTCATAATGAACAACATGCATCTCTTCGAGATTCAGAAAAGAATGAATGAAATGGCTGTTGCCGGTTTGGATACCAGTTCACTTGACGATGAGGCTTTCAATCTCGAAGCAGCGCAAGATAGATGCATACTTAGGCTTATAGCATCCTGCTGTAATGGAGATAAGCTCGTGAGAGCCACTGAACTTGTGAAGCTCTTGTCACTGGAGAAATCAATGAAAGGCGCAATTAAACTTGTCACCGCTCTAAAACTTCCCCACTTGGCCGAGAGGTTCAGTAGCATGTTAGAGCAAAAGCTTCTCCATGAAATGAAAAAACCCGCAGATACCAACGGCCACCAATTGACAGTTGATGTTTCAAATAGCAGAAGCAAGGTCCCAAATCAGACTGAAGCATCACCAAAATTATCTGCTCCCTTGTTGACCAAGAAAGCAAAATCACCAGAGGAAACCAAAGCTGGAATAGATAAGAGTGCGGTGGCGAATGGAACTGTGAAGGGGAAGAATACAGGGAATGATAGGGAAGGGAAGGTGGGGCAAATACGTCAGGTGGCAGCTCATAATCCTCGAGATATCTCTGTAAAGTCGTCAAATAAGCAGGAAGTGAAGAAGTCAGAGCCTAGTAATAGTATGGCACAACCAAGTCGCCCCTCCAATCCTTTTTTGAAGTCATCCATCAAGACGATGAGAAGCATTCAGGTACAGGTAGAAAGGGTGCTTCCTGCTAATCCGGATGCGATTAGCCATTACGACATTGAATATGTCACCTACCTTCGCCACCGCGAGCTCGACGAAGATCCTCACCTTCCTGACCAGACCCTAGCTCTTGATTCTATCCCCCACTGGTCCCACGCCGATTTCGATTTCGATTTCGACTTCTATCCTTCCGATCCCGAATTCCCGCCGCCCGATACCCCTCTCCGCCCTCACAACGCTCCTCGCGATCGTGCCTTGTCTCACCAGTTTGAATCCACCATCTCTCTACGAGGTGACGATAACTTCTCGGACCCCGGTTCGATTCCCAGCACCGATCTACTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATTTGTTTCAGCAGCGTGTTGAGCAATCGCAGGTCATGGGTCACAGCGATTTGGTCTCCGAAGTCGTGGATAATTCTAATTTCGGTATTATTGACGGTCATTGCGACGTGGGTGTTGATGCTATGGGTATGGATTTTGGATTTGGCTTAGGGTTTGGCTTGGATAGGGATTCTTTGGAGGGTGATGACATTAGTGGCTTTATGGTTGAAAATTATGGTTCTGGTGGTGGAGATGGTAACCATTTTTTCGTAGGAAGGAGGGTTTCTGGATCTGAGTCCGTGGGGGCACCGTCTACGGCAAGCCAAATTCGGCCTTTTGACAACTGTTTACGTCTCGGGGAGTTCGGGTCAGATTGTGCTGAGGAGGAGGAGGAGGATGGGGCTTTGGGCGTGTGCGTGCATTCGGAAGATGAATACAATTTGCATGACGAGAACGACGACGTTTCCAGCATCCCGCTTCGCTGGGATTCATTACAATTGGAGGATGACAGGGAGAATACCGAAGATTTTGAGTGGGAAGAAGTCGATGTTGATGAGAGGGACGTTTTGAGCATGCTCCCCGGTGAGGATGATGTGTCCATATCAGTTTCAGTTCCCCCAATAAATGGGCTTGAAGAAGAGGTAAGTGTTATGAGAGCGGGAGGTGTGGAAAATTTGGGTTGGGAAGTGTTGCTGAATGCCAATAATTTGGACACGAACCCTGATCTGGATCACGATGCAGAACCTTATTTTGGGGATCATGATGACTATATTTATACTGCAGAGTACGAAATGATGTTTGGCCAATTCGCTGACGATGAGAATCCCTTGGGTGGTCGGCCTCCAGCTTCCGTATCAGTTGTTTGGAATCTTCCATCAGTGATTGTGACCAAACATGATATCGAGAACAATGGTGCACTTTGTGCAGTTTGTAAGGACGAGTTCAATGTTGAAGAACAAGCGAAGCAATTGCCATGTTCACATTTCTACCATGGAGAATGTATTGTCCCATGGTTGGGAATTCGGAACACTTGTCCTGTTTGTCGATATGAGTTGACTACTGATGATGCTGATTATGAGCGTAGGAGGATGCAAAGATCTGGCCGTAGCTCATGA 4311 0.4544 MKIRSVKLREAHQAASNGRPSFCSVLWDQQAQHLVTACFSDVSISIHDPLLLSSPPKVLTHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSLLAAAGDDEGIKLINTVDGSIARVLKGHKGTVTGLAFDPNGEYLASIDSSGTVIYWELHSGRIVHNLKGIAPDTRADVSSMNVICWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLKGDHTQPICFLSWSPNGKYMATSSLDRQVLIWDVNRRQDIDRQKFNERICCMAWKPIGNALAVIDVMGKFGICDSVIPSSMKSPTEDIPMQSKNSNGLLFFDEEDLDLCASGSISNLGEDSDGESEPPRMKRLREQPLSEENFDEDGSDEMALHPKVESHKKPNRTHKENLNSVNVGHKSSIITCKPKMQEAFQPGSTPTQLGKRRFLCYTMLGSITTIEHDVYFHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKVVALGTAWVAAATSFNYLRIFTDGGLQRNIISLDGPVLTASGFKDKLAVVTQASACVSSNDQVLEFRVFNIPNETQLLTGRLPLTPGSSLTWFGFSEEGQLSSYDSKGVLRVFTSQYEGSWLPLFSKEKDENYWVVGLNASKLFCVICKKPDTFPQVMPKPVLTLLNLSFPLASSDLGSEALENEFIMNNMHLFEIQKRMNEMAVAGLDTSSLDDEAFNLEAAQDRCILRLIASCCNGDKLVRATELVKLLSLEKSMKGAIKLVTALKLPHLAERFSSMLEQKLLHEMKKPADTNGHQLTVDVSNSRSKVPNQTEASPKLSAPLLTKKAKSPEETKAGIDKSAVANGTVKGKNTGNDREGKVGQIRQVAAHNPRDISVKSSNKQEVKKSEPSNSMAQPSRPSNPFLKSSIKTMRSIQVQVERVLPANPDAISHYDIEYVTYLRHRELDEDPHLPDQTLALDSIPHWSHADFDFDFDFYPSDPEFPPPDTPLRPHNAPRDRALSHQFESTISLRGDDNFSDPGSIPSTDLLDRENQVNFVMDLFQQRVEQSQVMGHSDLVSEVVDNSNFGIIDGHCDVGVDAMGMDFGFGLGFGLDRDSLEGDDISGFMVENYGSGGGDGNHFFVGRRVSGSESVGAPSTASQIRPFDNCLRLGEFGSDCAEEEEEDGALGVCVHSEDEYNLHDENDDVSSIPLRWDSLQLEDDRENTEDFEWEEVDVDERDVLSMLPGEDDVSISVSVPPINGLEEEVSVMRAGGVENLGWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFADDENPLGGRPPASVSVVWNLPSVIVTKHDIENNGALCAVCKDEFNVEEQAKQLPCSHFYHGECIVPWLGIRNTCPVCRYELTTDDADYERRRMQRSGRSS 1436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1949 1436 SUPERFAMILY WD40 repeat-like 24 300 IPR036322 GO:0005515
Lele22g1949 1436 FunFam Transducin family protein / WD-40 repeat family protein 196 323 - -
Lele22g1949 1436 SUPERFAMILY RING/U-box 1357 1420 - -
Lele22g1949 1436 Gene3D - 2 192 IPR015943 GO:0005515
Lele22g1949 1436 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Lele22g1949 1436 MobiDBLite consensus disorder prediction 356 375 - -
Lele22g1949 1436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1337 1420 IPR013083 -
Lele22g1949 1436 Pfam Anaphase-promoting complex subunit 4 WD40 domain 203 289 IPR024977 -
Lele22g1949 1436 MobiDBLite consensus disorder prediction 919 938 - -
Lele22g1949 1436 FunFam E3 ubiquitin-protein ligase RING1-like 1334 1420 - -
Lele22g1949 1436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Lele22g1949 1436 SMART WD40_4 94 133 IPR001680 GO:0005515
Lele22g1949 1436 SMART WD40_4 2 48 IPR001680 GO:0005515
Lele22g1949 1436 SMART WD40_4 227 267 IPR001680 GO:0005515
Lele22g1949 1436 SMART WD40_4 136 175 IPR001680 GO:0005515
Lele22g1949 1436 SMART WD40_4 52 91 IPR001680 GO:0005515
Lele22g1949 1436 SMART WD40_4 178 224 IPR001680 GO:0005515
Lele22g1949 1436 MobiDBLite consensus disorder prediction 829 852 - -
Lele22g1949 1436 MobiDBLite consensus disorder prediction 820 938 - -
Lele22g1949 1436 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Lele22g1949 1436 SMART ring_2 1373 1413 IPR001841 -
Lele22g1949 1436 CDD RING-H2_RNF126_like 1373 1414 - -
Lele22g1949 1436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Lele22g1949 1436 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Lele22g1949 1436 MobiDBLite consensus disorder prediction 346 384 - -
Lele22g1949 1436 CDD WD40 23 297 - -
Lele22g1949 1436 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 942 - -
Lele22g1949 1436 Pfam Minichromosome loss protein, Mcl1, middle region 426 704 IPR022100 -
Lele22g1949 1436 Pfam Ring finger domain 1373 1414 IPR001841 -
Lele22g1949 1436 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Lele22g1949 1436 Gene3D - 193 310 IPR015943 GO:0005515
Lele22g1949 1436 ProSiteProfiles Zinc finger RING-type profile. 1373 1414 IPR001841 -
Lele22g1949 1436 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
Lele22g1949 1436 Pfam WD domain, G-beta repeat 141 174 IPR001680 GO:0005515
Lele22g1949 1436 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1949 Lele-ChrLele22 24168482 24176501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1949 1222 1420 C3H Transcription Factor Family AT5G60820 48.826 2.50e-48 177