Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1939 ATGGAGTCTTGGAGATACGATTCTGGAGATAAGGGTTTTGTGCCCAATAATAAACTCCCACCACCTAATACGCTTGCGAGAAGCAAAAAGTCCTTCCCGGGTTGGGAATTGAAAGCCCAATCTAATTTTTCCAACGACATTTTGGCGTCGGCTCAACGTCATTTAGAGGGTGGAGTTTATGATGAAATGGGATTTCCAGAAATGTTGGGGAAACAATTGTCTAATTATCCGCTTGGCTGTATTATGAATGATCCAAATTCATTTTCTGGAGGCGAAGACTCTGCTTCAAAGCTTTCAAACTCTGTGGTTGAATCTAACAGCCGGGATTCCTTCATTGATTTGAAGTTAGGACGAGTTGGTGATCAAAAAGATGCCAATGGATCGCCATTCTCCAAAGTTATTCCTCTTTTGTGTTCTTCAGAGTCATCTACGACCCCAAAGAGAATGAGAACTTCAGGGGTTCAGCCACAGACTGCTTACTGCCGAGTTTATGGCTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGCGAGATTCATTCCAAGACAGCTAAAGTCATTGTGAATGGCATAGAGCAAAGGTTTTGTCAACAATGTAGCAGGAACAAACCTGACCTAATCATTGGTGGATACTACTACTTCTCATCAAATAGAAAGTTTCATTTGCTGGCTGAATTTGATGATGCTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAATGGGTACTCACTCTGGAAAGGGCAGGAGGTTGCTTCAGTCATATAATGATAGCAGATTCCAGGGTAGCATGCTAACAGCAGCATCTTTTGGCATTCTGCATTCTAATAAGTATGGCGCTGATAACTGGTGGAAACCTATAAAGGTTCAAGGTGGGAATGATTTTAGGCATATCTCTTCTATTCCTCTCACAAATGGGCATTCTCAATCAAGATCTCTGCTTCCTTCATATGCTGAAAAGCAATATCCGCTTCTGAATGAAACTGGTGCTATATCCACCACAGGAAGCATATTCTGTGAGAACAACAGTCCGCAAGAAAATAACAATGCACCTCTTGGGAACATTATGATGGCTTGA 1119 0.4272 MESWRYDSGDKGFVPNNKLPPPNTLARSKKSFPGWELKAQSNFSNDILASAQRHLEGGVYDEMGFPEMLGKQLSNYPLGCIMNDPNSFSGGEDSASKLSNSVVESNSRDSFIDLKLGRVGDQKDANGSPFSKVIPLLCSSESSTTPKRMRTSGVQPQTAYCRVYGCNKDLSASKDYHKRHKVCEIHSKTAKVIVNGIEQRFCQQCSRNKPDLIIGGYYYFSSNRKFHLLAEFDDAKRSCRKRLAGHNERRRKPQMGTHSGKGRRLLQSYNDSRFQGSMLTAASFGILHSNKYGADNWWKPIKVQGGNDFRHISSIPLTNGHSQSRSLLPSYAEKQYPLLNETGAISTTGSIFCENNSPQENNNAPLGNIMMA 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1939 372 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 92 318 IPR044817 GO:0003677
Lele22g1939 372 Coils Coil 371 372 - -
Lele22g1939 372 MobiDBLite consensus disorder prediction 243 263 - -
Lele22g1939 372 Pfam SBP domain 224 252 IPR004333 GO:0003677
Lele22g1939 372 Pfam SBP domain 161 208 IPR004333 GO:0003677
Lele22g1939 372 ProSiteProfiles Zinc finger SBP-type profile. 158 253 IPR004333 GO:0003677
Lele22g1939 372 MobiDBLite consensus disorder prediction 1 27 - -
Lele22g1939 372 SUPERFAMILY SBT domain 159 257 IPR036893 GO:0003677|GO:0005634
Lele22g1939 372 Gene3D - 152 240 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1939 Lele-ChrLele22 24076272 24079480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1939 147 271 SBP-box Gene Family AT1G69170 57.600 2.52e-41 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele22g1939 SBP 9.3e-17 No_clan