Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1903 ATGATGCTTAGCAGGGGATCCCCAGAAATGGAGTCCCAGAAGAAACCAAAGCGATCAGAGCTTTTGAGCAAGACGAAGAAGCTGGATTTTCAGTCTGCAATGGAGGATTCTGAGGAAGATGATGATAAAGAGCAAGGGAAGAGGAATTTCAAGTTGCTAGGTTCGGAAATGAACTCAAATCCCTCCAAGATTTGTCACAGGAGAGGCAAGTTCGAGTGTACTACTTGCAACAAGATCTTCCATTCTTACCAAGCTCTTGGTGGCCATAGAGCCAGCCATAAGAAGATCGCCAGAGACTGCTTTGTTCCAATAACAGATGAGACCAGTGAGAACTCTGTAAAACCTGATTTGTCTCACCATGAAGCAATTTCTGGTTCGGATGTTCATGTAGATGATGCAGAGTTTGACAAGAGCAAGGATCATGATAAGAGATCCCATTTAGCGGAGGTGTCTGATTTGATTGAGGAACCAGTTGAGAAAATTAGGGAGTTGATTGATCTTAATGTTCCAGCAAAGGAAGAAGACAGCAACAATAATAGCAATTCTGAATGTTACAGATCAACATCACCATGGTGGGTGAGAAGCATCCACAACAAGCTGGAGGCTCTAGTAGGCCTATAG 621 0.4348 MMLSRGSPEMESQKKPKRSELLSKTKKLDFQSAMEDSEEDDDKEQGKRNFKLLGSEMNSNPSKICHRRGKFECTTCNKIFHSYQALGGHRASHKKIARDCFVPITDETSENSVKPDLSHHEAISGSDVHVDDAEFDKSKDHDKRSHLAEVSDLIEEPVEKIRELIDLNVPAKEEDSNNNSNSECYRSTSPWWVRSIHNKLEALVGL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1903 206 SUPERFAMILY beta-beta-alpha zinc fingers 69 94 IPR036236 -
Lele22g1903 206 MobiDBLite consensus disorder prediction 1 46 - -
Lele22g1903 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lele22g1903 206 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele22g1903 206 MobiDBLite consensus disorder prediction 112 130 - -
Lele22g1903 206 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 176 IPR044303 GO:0006355
Lele22g1903 206 MobiDBLite consensus disorder prediction 10 33 - -
Lele22g1903 206 MobiDBLite consensus disorder prediction 110 130 - -
Lele22g1903 206 Pfam C2H2-type zinc finger 71 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1903 Lele-ChrLele22 23805304 23805924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1903 71 175 C2H2 Transcription Factor Family AT1G02030 40.952 1.33e-12 63.2