Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1897 ATGAAAGGCAAATCAAGGAAGGAGATAGGGGATGTTCTAAGAGAGTACAACATACCAGGAGGAGTGTTACCCAGCAACATCAAGTGTTACGAGTACGAGGAATCAAAGGGCAAGCTGACTGTGCATCTTCCATATCCGTGTGAGGTTTGCTTCAAGGACTCGTCCCTGATCAGGTACTCCACACGTGTGAAGGCCGCCTTGTCCAGGGGCAAACTCACCGTTTTGGATGGCATGAAGACCAAGATGAGAGCTACAAGTCTGACAAAGTTTGCTTCACTGCTTCCCGCGTCAAGATCAGCAGATCTAGAGATGTCTATGACCTGCCTCGTCACCGCAAAAGTGAATCCAACGGTAAGGAACGACTCTGGTCCCACTGCGAGGATATTCTCTTCTCAAGTGGAAAACCCTAGTTTGCTTTCGGATATATCCCGAAGATATATATCTCTCCGCCTCTGCCTCGTCCTCTCCGTCCCTCGGGCACTGCAATTCTGCCTCTCCTTTGTGAGTCGGTCGAGTTCGATACGGTGCGTTTTGCTTTGGTCAACGAATCCCACCATGTCGGACGAGGAACATCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACTTATCCTCAACAAGCCGGCACCATTCGTAAGAACGGCTATATCGTCATCAAGAACCGCCCCTGCAAGGTTGTTGAAGTGTCAACCTCCAAGACCGGTAAGCACGGTCATGCTAAGTGTCATTTTGTTGGAATTGATGTCTTCACTAACAAAAAGCTTGAAGATATTGTGCCCTCTTCCCACAATTGTGATGTTCCCCATGTGAACCGTACTGATTATCAACTCATTGATATTTCTGAGGATGGATTTGTGAGTCTGCTTACTGAAAATGGGAATACTAAAGATGACCTGAGGCTTCCTACCGATGAAAATCTGCTTAGTCAGATAAAGGAAGGATTTGATGGTGGAAAGGACCTTGTTGTTTCTGTCATGTCCGCTATGGGGGAGGAGCAGATTTGTGGCTTAAAGGATATTGGGCCGAAGTAG 1035 0.4792 MKGKSRKEIGDVLREYNIPGGVLPSNIKCYEYEESKGKLTVHLPYPCEVCFKDSSLIRYSTRVKAALSRGKLTVLDGMKTKMRATSLTKFASLLPASRSADLEMSMTCLVTAKVNPTVRNDSGPTARIFSSQVENPSLLSDISRRYISLRLCLVLSVPRALQFCLSFVSRSSSIRCVLLWSTNPTMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDVFTNKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKEGFDGGKDLVVSVMSAMGEEQICGLKDIGPK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1897 344 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 270 339 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele22g1897 344 Gene3D - 1 93 IPR036758 -
Lele22g1897 344 FunFam Eukaryotic translation initiation factor 5A 186 270 - -
Lele22g1897 344 SUPERFAMILY Translation proteins SH3-like domain 200 278 IPR008991 -
Lele22g1897 344 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 186 342 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele22g1897 344 SUPERFAMILY Nucleic acid-binding proteins 271 341 IPR012340 -
Lele22g1897 344 TIGRFAM eIF_5A: translation elongation factor IF5A 202 337 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Lele22g1897 344 Gene3D - 186 270 IPR014722 -
Lele22g1897 344 SUPERFAMILY At5g01610-like 3 82 IPR036758 -
Lele22g1897 344 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 235 242 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele22g1897 344 Pfam Protein of unknown function, DUF538 11 83 IPR007493 -
Lele22g1897 344 Gene3D - 271 343 IPR012340 -
Lele22g1897 344 FunFam Eukaryotic translation initiation factor 5A 271 343 - -
Lele22g1897 344 SMART eIF_5a_2 270 339 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Lele22g1897 344 CDD S1_eIF5A 271 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1897 Lele-ChrLele22 23761404 23764010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1897 186 344 Eukaryotic Initiation Factors Gene Family AT1G13950 89.308 6.79e-103 297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1897 22 23761404 23764010 Lele22g1897 22 23761404 23764010 ECH
Lele22g1897 22 23761404 23764010 Lele24g1845 24 23360565 23362105 hybridization