Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1895 ATGGGTTGTGTGAATGCGAAGCAGGCCGTGTCGGTGACGCCTGCTATTGACCACTCTGGTGTGTTTCGTGGCAATGCGGGTACGGGAAATTTGGGAAGGAATTTAGGAGAGTCGGAGAAGAAGAAGAAGAAGAGCGAGTCAGTGGGGCTGAGTAGAAGCGAGGTGGGTGATTCGGGAAGGGCGAGTTCGAATGGAGGTTGTGACTCGTATAGTTTCAGATTGGGGAATCTGCAAAAGTACGTAGAAGGAGAGCAAGTAGCGGCGGGTTGGCCGGGTTGGCTTACCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTGCCCCTCCGAGCCGATGCGTTTGAGAAACTTGAGAAGATCGGACAAGGAACATACAGCAGTGTCTTCCGAGCGCGAGAACTTGAGACGGGGAAGATAGTGGCTCTGAAGAAGGTACGGTTTGACAACTTTGAGCCCGAAAGTGTTAGGTTCATGGCTCGAGAAATAATGATTATCAGAAGGCTTGATCATCCAAACATTATAAAATTGGAGGGCTTGATTACTTCCAAATTGTCCTGTAGCATATATCTTGTATTCGAGTATATGGAACATGACATTACAGGGCTCATATCTTCCCCTGATATCAAGTTTAGTGAACCGCAGATTAAATGCTACATGAAGCAGTTGTTATCTGGACTTGACCATTGTCATTCACGCGGTGTAATGCACCGTGACATCAAGGGATCTAATCTTCTAGTGAATAATGAAGGGATACTAAAGGTGGCGGATTTTGGACTGGCGAACTTCTCGAATTCTGGGCACAAACAGCCCCTCACTAGTCGTGTAGTTACATTGTGGTACCGTCCTCCTGAACTTTTACTGGGTTCAACAGACTATGGTCCTTCTGTGGATCTCTGGAGCGTTGGATGTGTATTTGCTGAACTACTTGTTGGGAAGCCTATCCTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCTCCACCTGAAGAATACTGGAAAAAGTCTAAGCTCCCTCATGCAACGTTGTTCAGGCCACAGCAACCATATAATAGTTGTCTCCGAGAGACCTTTAAAGATTTGCCTCCACCTAGTGTGAACTTGCTGCAGACTCTTCTTTCCATTGAACCATACAAACGTGGAACTGCCTCCTCTGCTCTCTCGTCAGAGTATTTCAAAACAAAGCCATATGCTTGTGAACCATCAAGCTTGCCGATATACCCACCTAGCAAGGAGATTGATGTTAAACAGCGAGAGGAGTCAAGGAGGAAAAATATTAGTGGAAGAGCACGTGGACCTGAAACAAGAAAACCATCAAGAAAGCCATTAGGATTCAACAAATTAGTCCCAACAGAGGATTTGGCAAATCAAACCCATAAATTCCAAAGGGTAAATGGCAGGTCAGTCCACATCCTTAAAGAAGGGAACACCAATGTAGTTAAGGAGGAACCAAAGCCATCTAGTGGTGAACCAGATGATGCTTCCCATACGAAGAATGCATCTCAAGGAGATATTCCCTTTTCTGGGCCATTGCAAGTTTCCACATCAAGTGGTTTTGCGTGGGCAAAAAGACGTAAAGATGACATTTCAATAAGATCCCACTGTCGATCTATTTCAAGGGGGCATATTGTCAATCCATTAGAGTCTGCTGGACCAAATTCAATGAATAACTTTGATTCCAGAAACATGGAAAATAAGGATTGTTTGGGACGCTCCAACTCTCAGAGTCATGATCCACTTGAAATCCCTAAGCTTGCCATGCAAAATCAATGGAGCAAGTTTGATCTCCCAGATTCTTTTGATGCTTCTGACGAATACCACTCACAGGAGCTATCTATGGCACTTTATCATAGAGAGGATTCAATATCCAAGAGAAGTAACCTGAGTTATCAGGATCAAGCAGAGAAGGTTGAGTTTTCAGGACCCCTGCTATCTCAAATTCATACTGTTGATAAGCTCTTAGAAAAACATGAGCGCCACATCCGCCGAACAGTCCGAAGATCTTGGTTTCAAAGAGGTAAGAAGCAAGGGAAGCAAGTGTAA 2058 0.4504 MGCVNAKQAVSVTPAIDHSGVFRGNAGTGNLGRNLGESEKKKKKSESVGLSRSEVGDSGRASSNGGCDSYSFRLGNLQKYVEGEQVAAGWPGWLTAVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREIMIIRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLISSPDIKFSEPQIKCYMKQLLSGLDHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFSNSGHKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPEEYWKKSKLPHATLFRPQQPYNSCLRETFKDLPPPSVNLLQTLLSIEPYKRGTASSALSSEYFKTKPYACEPSSLPIYPPSKEIDVKQREESRRKNISGRARGPETRKPSRKPLGFNKLVPTEDLANQTHKFQRVNGRSVHILKEGNTNVVKEEPKPSSGEPDDASHTKNASQGDIPFSGPLQVSTSSGFAWAKRRKDDISIRSHCRSISRGHIVNPLESAGPNSMNNFDSRNMENKDCLGRSNSQSHDPLEIPKLAMQNQWSKFDLPDSFDASDEYHSQELSMALYHREDSISKRSNLSYQDQAEKVEFSGPLLSQIHTVDKLLEKHERHIRRTVRRSWFQRGKKQGKQV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1895 685 MobiDBLite consensus disorder prediction 35 50 - -
Lele22g1895 685 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele22g1895 685 MobiDBLite consensus disorder prediction 417 446 - -
Lele22g1895 685 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele22g1895 685 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Lele22g1895 685 MobiDBLite consensus disorder prediction 498 517 - -
Lele22g1895 685 MobiDBLite consensus disorder prediction 27 64 - -
Lele22g1895 685 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele22g1895 685 PANTHER CELL DIVISION PROTEIN KINASE 111 401 - -
Lele22g1895 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Lele22g1895 685 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524
Lele22g1895 685 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Lele22g1895 685 MobiDBLite consensus disorder prediction 481 497 - -
Lele22g1895 685 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Lele22g1895 685 CDD STKc_CDK9_like 113 397 - -
Lele22g1895 685 SUPERFAMILY Protein kinase-like (PK-like) 107 402 IPR011009 -
Lele22g1895 685 MobiDBLite consensus disorder prediction 413 452 - -
Lele22g1895 685 FunFam probable serine/threonine-protein kinase At1g54610 196 436 - -
Lele22g1895 685 MobiDBLite consensus disorder prediction 470 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1895 Lele-ChrLele22 23741340 23746097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1895 105 464 Core Cell Cycle Gene Families AT5G10270 48.936 4.85e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lele22g1895 Pkinase 1.7e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1895 22 23741340 23746097 Lele23g0088 23 572662 577385 hybridization
Lele22g1895 22 23741340 23746097 Lele24g1842 24 23339798 23344821 hybridization