Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1885 ATGGAGATTGAAGGCTTTGATTTGAACAAAGTCTATGCTAATGCTGGAAATCATAGCAAGAGGGCTGATGATTTCATTGATAGAAGCAAGGTGAAAATATTGTTGTGCGATAACGATACCAAGAGTTCGGAAGAGGTTTTAACGCTTCTTTCGGGATGTTCTTATCAAGTTACTTCAGTAAGCTCGCCAAGACAGGTAATTGATGTACTGAATGCAGAGGCGCAAGATATTGATATCATACTAACTGAAGTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATTGCACGAAACAAAGATTTGCATCGAATTCCTGTCATAATGATGTCGGCACATGATGAGGTATCCATTGTTATGAAGTGTTTGAGACTTGGAGCAGCGGACTATCTAATAAAGCCTTTACGCTCTAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGTCTGACAGAGAAGAACATAATGAACTATAATTCTGATCTGGTAGCATCAGCCATAATGAACTATGATTCTGATATGGTAGCATCATACCCTGGAGATGGTAATACAACCAGTACCTTGTTCTCAGATGATACAGAAGACAAGTCCTACAGAAGCACTAATCCAGAGGCAGGAATGTCAATCCAGCAGCAACATGAGTCTACAGTTGCTGCTGCTGCTGATGTTCCTGAGGAGCCTCCGAGTGCTCATTCATCAGATTATTGGCCTGGTGTGCCTGGAATTAGTGATCGCCAAACAAGACACTGTTCTTCATTGGGACCAAAGAAATGTGGACTAAGGATTGGGGAGTCATCGGCCTTCTTTAGTTATGTTAAAACAACCATGCAAAAGAGCAACTTACAAGGGATTCCTCAAGTTCAGAACAATGCTGCAACGCAACTGAGGATGGAAGACATGCATCAAACTTGTCCACAAGGGGTTCATGAAGATGGAGAGCCAAGTGAGAGACCTAATAAAGATGATTTACCCAGCAGCATCAGTAATCCTGATTCTTTCTCTATCGACAATTCTTGTGCTGCACCCGCATCCATGGGAATTCTAAATCAAAAGAATTTCAATGAACATTTACCACAGGATGTTATCCATCTTAGAAATGGAGGTCATATTTCTGAGACTGAAGTACCAGGTACTACTTCCCAACAACATGCTCATTTATATTATATTTCAGGGTTCTTCAATCACCTTCTGATGCCATCCTCAGCGCCAATGTATCCTAAGAATCACCTGGACCAACAGAATCATGCTAGTGCGACTATGATTGCACAGTACAATGACATTTCCCATTGTCCTCCTAATGGGAAAGGGATAAGTTCCTTCTCATATTACCCGATGACTATGTGCTTACAACCTGGTCAGACGATGTCCTCAGCTCATTCACGGCCGCCATTTGGAAGTTCAAGTTCATCCAACGCAAAACTGGGTATAGTTGATAGAAGAGCAGAAGCATTGATGAAGTTTAGAAAGAAAAGGAAAGAACGATGCTTTGATAAGAAGATTAGGTATGTCAATCGGAAGCAGCTTGCTGAAAGGCGACCTCGCGTGAGGGGACAGTTTGTGAAGAAGTCGAATGGGGTAATCAATGTTGATCTTAATGGACAACCTGCTTCTATTGAGTATGGTCAAGAGGAGGAGGAGGAGGAAGACGAAGAGAACAATGTGAGAGTTTCATCTCCTGAAGATGCTTGA 1713 0.4203 MEIEGFDLNKVYANAGNHSKRADDFIDRSKVKILLCDNDTKSSEEVLTLLSGCSYQVTSVSSPRQVIDVLNAEAQDIDIILTEVDLPMKKGMKMLKYIARNKDLHRIPVIMMSAHDEVSIVMKCLRLGAADYLIKPLRSNELLNLWTHMWRRRRMLGLTEKNIMNYNSDLVASAIMNYDSDMVASYPGDGNTTSTLFSDDTEDKSYRSTNPEAGMSIQQQHESTVAAAADVPEEPPSAHSSDYWPGVPGISDRQTRHCSSLGPKKCGLRIGESSAFFSYVKTTMQKSNLQGIPQVQNNAATQLRMEDMHQTCPQGVHEDGEPSERPNKDDLPSSISNPDSFSIDNSCAAPASMGILNQKNFNEHLPQDVIHLRNGGHISETEVPGTTSQQHAHLYYISGFFNHLLMPSSAPMYPKNHLDQQNHASATMIAQYNDISHCPPNGKGISSFSYYPMTMCLQPGQTMSSAHSRPPFGSSSSSNAKLGIVDRRAEALMKFRKKRKERCFDKKIRYVNRKQLAERRPRVRGQFVKKSNGVINVDLNGQPASIEYGQEEEEEEDEENNVRVSSPEDA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1885 570 Pfam CCT motif 488 530 IPR010402 GO:0005515
Lele22g1885 570 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 249 IPR045279 GO:0009736
Lele22g1885 570 MobiDBLite consensus disorder prediction 312 342 - -
Lele22g1885 570 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Lele22g1885 570 MobiDBLite consensus disorder prediction 539 570 - -
Lele22g1885 570 Gene3D - 31 229 - -
Lele22g1885 570 MobiDBLite consensus disorder prediction 193 242 - -
Lele22g1885 570 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Lele22g1885 570 ProSiteProfiles CCT domain profile. 488 530 IPR010402 GO:0005515
Lele22g1885 570 MobiDBLite consensus disorder prediction 208 225 - -
Lele22g1885 570 MobiDBLite consensus disorder prediction 312 328 - -
Lele22g1885 570 SUPERFAMILY CheY-like 29 157 IPR011006 -
Lele22g1885 570 SMART REC_2 31 146 IPR001789 GO:0000160
Lele22g1885 570 MobiDBLite consensus disorder prediction 548 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1885 Lele-ChrLele22 23692297 23696168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1885 20 569 Response Regulator Gene Family AT5G61380 45.994 6.59e-144 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Lele22g1885 Response_reg 6.7e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1885 22 23692297 23696168 Lele22g1885 22 23692297 23696168 ECH
Lele22g1885 22 23692297 23696168 Lele23g0097 23 630298 634734 hybridization
Lele22g1885 22 23692297 23696168 Lele24g1833 24 23288480 23292311 hybridization