Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1882 ATGGAAGCTGAAGAGATCGAAAGAGTTGGAAGGTTCCATTTTGTATCGAAGTTGATCTTATCCGGCATTTCCGGGGCTCTCACGGGATGTTTTGCCATTGCTGGAGCCATTACAGGAGCTATAGCTGGTGCGTTAGCGAGTAGGGCTTCTGAGAGCGGTTTTCTCCGTGGAGCTTCATTGGGGGCCATTGCTGGGGCTATAATATCTGTTGAGGTGCAAGAAGCTTCCCGTGCCTACTGGTGTTTAGAGCAAACTGGCACGAGGAGCTCATCATCCATGGCAGATTTCATAGAGCAACTTGTTCGTGGGAGGCTTGTAGAGGAACAATTTTCACCAGCTATACTAACTGCTTACAGTTGGCAGGTTGGGGTTGCTAATACAGGCTATGATGAGATTCCTGAGGTCCATAGCTTAGTTTCACCTAGAGGATTGTCTGGGGATTCGTTGAAGAAGTTACCGCACCATGTTATCTTAAAGGACATGAAGACGGAGAATCTCTGCTGCACAATATGTTTGCAGGATTTTGAAGTTGGAGAAATTGCAAGGAGCTTACCTCTATGTCAACATACCTTTCACTTGAACTGTGTAGACCGATGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGGCAATATGTATAG 642 0.4626 MEAEEIERVGRFHFVSKLILSGISGALTGCFAIAGAITGAIAGALASRASESGFLRGASLGAIAGAIISVEVQEASRAYWCLEQTGTRSSSSMADFIEQLVRGRLVEEQFSPAILTAYSWQVGVANTGYDEIPEVHSLVSPRGLSGDSLKKLPHHVILKDMKTENLCCTICLQDFEVGEIARSLPLCQHTFHLNCVDRWLVKNDSCPVCRQYV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1882 213 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Lele22g1882 213 SMART ring_2 168 209 IPR001841 -
Lele22g1882 213 SUPERFAMILY RING/U-box 149 213 - -
Lele22g1882 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 213 IPR013083 -
Lele22g1882 213 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 212 IPR044523 -
Lele22g1882 213 Pfam Ring finger domain 168 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1882 Lele-ChrLele22 23678670 23680924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1882 1 213 C3H Transcription Factor Family AT1G74410 55.607 5.37e-75 224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1882 22 23678670 23680924 Lele22g1882 22 23678670 23680924 ECH
Lele22g1882 22 23678670 23680924 Lele23g0099 23 652230 656061 hybridization
Lele22g1882 22 23678670 23680924 Lele24g1829 24 23272770 23274710 hybridization