Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1863 ATGGGGAGACCTCCTTGCTGCGACAAAATTGGAGTTAAGAAAGGACCTTGGACTCCTGAAGAAGACATCGTCTTGGTCTCCTACATCCAAGAACACGGTCCTGGCAATTGGAGATCCGTTCCCACCAATACCGGTTTGATGAGATGCAGCAAAAGCTGCCGACTCCGATGGACCAACTATCTCCGCCCCGGTATCAAACGCGGTAACTTCACCGAACACGAAGAGAAGATGATCATCCACCTTCAAGCTCTTCTTGGTAATAGGTGGGCGGCCATAGCTTCTTATCTTCCACAGAGAACAGACAATGACATAAAGAACTACTGGAACACGCATCTGAAGAAGAAGCTCAAGAAGAAGGGTGAAAATGGTGGCGGCGGCAGGGAAGGTGGTATCGGTAACGATCAAGAAGACGGTAGGTATTTGTCGTCATCTTCACAACAACCAAACAAGGGTCAGTGGGAAAGAAGGCTTCAAACCGATATCCACATGGCCAAACAAGCCCTTTGTGAAGCTCTCTCCATTGACAAGCCCACTCCTTCAACATTAAATCATAATTTCCCCATCTTCTCTGACAGTAATAATAATAATAATAATAAGCCCTCATCATCATCATCCATTTCCTTCAACCCCATCACCACAACAAAATTACCCCACCAACTAGAACCTAATTCATCGTACGCATCGAGTGCCGATAATATAGCTCGACTTCTGCAAAACTGGATGAAGAAGACTCCAAACTCGGTCTCTGGTTCGACTTCGAGTGAAGGTGAAGGAGCACAGAGTGGGAGTGGGAGTGGGACTACAACACCAGATCAGGCCCTTGACTATAGCTCTCTCTTGAGCTTCAACAATAACAACAACTCTGATATGTCTACAGAGAGTAATAGCTTCTTACAAGAAGAAAGCAAGCCGAATTTGGATGCGTATCATCATCACGTGCCTTTAACGCTTCTGGAGAATTGGCTTTTTGAAGATGCTGCAAATCCTCAAGGCCCCGAAGATCTGTTGACCATGTCACTTGAGGAAACTACAGCAGATCACCTATTTCAGACTCACTTGGGGAAGGAGAAATTCTAG 1077 0.4587 MGRPPCCDKIGVKKGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKKGENGGGGREGGIGNDQEDGRYLSSSSQQPNKGQWERRLQTDIHMAKQALCEALSIDKPTPSTLNHNFPIFSDSNNNNNNKPSSSSSISFNPITTTKLPHQLEPNSSYASSADNIARLLQNWMKKTPNSVSGSTSSEGEGAQSGSGSGTTTPDQALDYSSLLSFNNNNNSDMSTESNSFLQEESKPNLDAYHHHVPLTLLENWLFEDAANPQGPEDLLTMSLEETTADHLFQTHLGKEKF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1863 358 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lele22g1863 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele22g1863 358 MobiDBLite consensus disorder prediction 185 226 - -
Lele22g1863 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele22g1863 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele22g1863 358 MobiDBLite consensus disorder prediction 115 153 - -
Lele22g1863 358 Gene3D - 13 66 - -
Lele22g1863 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele22g1863 358 MobiDBLite consensus disorder prediction 244 273 - -
Lele22g1863 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 280 - -
Lele22g1863 358 CDD SANT 69 111 IPR001005 -
Lele22g1863 358 Gene3D - 68 125 - -
Lele22g1863 358 MobiDBLite consensus disorder prediction 137 153 - -
Lele22g1863 358 CDD SANT 16 61 IPR001005 -
Lele22g1863 358 SMART sant 66 114 IPR001005 -
Lele22g1863 358 SMART sant 13 63 IPR001005 -
Lele22g1863 358 FunFam Transcription factor MYB30 68 126 - -
Lele22g1863 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele22g1863 358 FunFam MYB-related transcription factor 13 66 - -
Lele22g1863 358 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1863 Lele-ChrLele22 23550427 23551687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1863 1 328 MYB Transcription Factor Family AT5G62470 53.276 2.02e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele22g1863 Myb_DNA-binding 5.1e-14 CL0123