LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g1850	ATGGTTCACGTTTCATTCTACCATAACTATGGGAAAACCTTCAAGAAGCCCCGCCGTCCATATGAGAAGGAGCGTTTGGATTCTGAGTTGAAGCTTGTGGGAGAGTATGGACTTCGCTGCAAAAGGGAGCTTTGGAGGGTTCAGTACGCTCTGAGTCGTATCCGTAATAACGCAAGGGAACTTTTGACCCTTGATGAGAAGAACCCACGTCGGATCTTCGAGGGTGAAGCTCTTCTGCGTCGTATGTTTCGATATGGGCTCTTAGATGAGAGTCAAAACAAGCTCGATTACGTCTTGGCTTTGACTGTGGAGAACTTCCTCGAGCGTCGTCTTCAAACACTTGTCTTCAAATCTGGGATGGCCAAGTCTATTCATCATGCTAGGGTTCTCATCAGGCAGAGACATATAAGGGTTGGGAGGCAGGTGGTGAACATCCCATCATTCATGGTTCGAGTTGATTCCCAGAAGCACATTGACTTTTCACTTACAAGTCCGTTTGGGGGCGGTCGTCCTGGAAGAGTGAAGAGAAGGAACCAAAGGGCTGCTGCCAAGAAGGCTGCTGGCGGAGAAGGAGATGAGGAGGATGAGGAGTAA	594	0.4882	MVHVSFYHNYGKTFKKPRRPYEKERLDSELKLVGEYGLRCKRELWRVQYALSRIRNNARELLTLDEKNPRRIFEGEALLRRMFRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQRAAAKKAAGGEGDEEDEE	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g1850	197	FunFam	40S ribosomal protein S9	108	188	-	-
	Lele22g1850	197	ProSiteProfiles	S4 RNA-binding domain profile.	109	183	-	-
	Lele22g1850	197	SMART	Ribosomal_S4_2	8	108	IPR001912	GO:0019843
	Lele22g1850	197	TIGRFAM	uS4_arch: ribosomal protein uS4	12	166	IPR005710	GO:0003735\|GO:0006412\|GO:0015935
	Lele22g1850	197	Gene3D	-	108	164	IPR036986	GO:0003723
	Lele22g1850	197	SMART	s4_6	109	180	IPR002942	GO:0003723
	Lele22g1850	197	CDD	S4	109	153	-	-
	Lele22g1850	197	PANTHER	30S 40S RIBOSOMAL PROTEIN	12	183	IPR022801	GO:0003735\|GO:0015935\|GO:0019843
	Lele22g1850	197	SUPERFAMILY	Alpha-L RNA-binding motif	12	159	-	-
	Lele22g1850	197	Pfam	Ribosomal protein S4/S9 N-terminal domain	10	108	IPR001912	GO:0019843
	Lele22g1850	197	ProSitePatterns	Ribosomal protein S4 signature.	107	131	IPR018079	GO:0019843
	Lele22g1850	197	Pfam	S4 domain	109	152	IPR002942	GO:0003723
	Lele22g1850	197	MobiDBLite	consensus disorder prediction	163	197	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g1850	Lele-ChrLele22	23475248	23476642	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g1850	1	187	Cytoplasmic Ribosomal Protein Gene Family	AT5G39850	91.979	1.77e-127	355

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1882	21	26171185	26172564	Lele22g1850	22	23475248	23476642	ECH
	Lele22g1850	22	23475248	23476642	Lele22g1850	22	23475248	23476642	ECH
	Lele22g1850	22	23475248	23476642	Lele23g0133	23	854990	856367	hybridization
	Lele22g1850	22	23475248	23476642	Lele24g1801	24	23089843	23091156	hybridization