Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1842 ATGGGGAAGTCACCGGGAAAATGGATAAAAACTGTGCTATTTGGGAAAAAGTCATCCAAATCAAATATTTCAAAAGCAAGAGAGAAACTTGTTAAACAGAAAGAAGCGCCGATTGCTTGCAAGGCATCAGAAACTGAGTTTTCTTTTGATCCAACTCCCATTACTTTTGCTAGAAATGAGAGGGATGCAGAACTGGAAAATAAGGATCCAGAAAATCTTTTGCTGCAGAATCAAGTAGATATTGCAGGATCTGATCCTCAAGATACCCCTTATGATCCAGAGAGAATTATGCAGGAGGAAGCTGCAACAACTGTGCGGTTTACTTTACCTCCTGATCTAGAGAAAATTAAGCAGGAGGAAGCTGCAATGGAGATGCAGGCTACTTTACCTCCTGATCTAGACATGATTAAGCAGGAGGAAGCTGCAGGGAAGGTGCAAGCTACTTTCAGGGGTTATTTGGCTCGCAGGGCTTTCAGGACTCTTAAAGGCATAATAAGGTTGCAAGCACTTATCCGAGGGCGCTTGGTTAGGAGGCTAGCTATTTCTACTTTATTTTGCATGTATGGGATTATCAAGTTACAAGCACTTGTTCGTGGTCAAATAGTTAGGCAGTCTGATGTTGGGTATGAAATGCATGGGAAGTGCAATCTTATGAAGCCTCTGGTTGAAAAGTGTGGCGACTCGGTTGGGTTAACCACAAAAATTGCAAATATGTCAGCAAATATTTTTATCCACAAGCTTCTTGCTTCATTGACTGCAACAACTGCTTTGCGTTGTCAATATGCTTATGGGGATCCGAATGCAGTCCTAAGTTGGTTGGAGTGCTGGTCGGCGTCTCACTTTTGGAAACCGGTTCCCAAACCCAAGAAAGTTCTAGACTCTAAATCTCAGAATATTTCAAATGGAGATGCTCAAATGAACAAGCCAAAACGTGGTAACTGGAAGATTCCTTCTACAAGTTCAGAGTTGGTCTTAGTGCTAGAAAATCCTGACTTTGAGAATCCGAAACGAAGCCTGAGAAAAGTTTCAAGCAAGCCCCCAGTCACTAATCCAGTGCAGGAAAATTCAGAAAATGAGTTTGAGAAGGTTAAGCGTAACTTGAGAAAGATTCATAACCCTGTTGTAGAGAATTCTGCTCAGTCAGAAGTTGAATCAGAGACTATGAAACAGCATTCAGAAAAGATAGCAGTTACCTCAGGTTATGGTGTTTCAGAAGAAGGATTAAAAAATTGTTCCAATGAGAAGATAAAAATGGATGCAACATCCACCATGTCCGATGAGCCTGATGGAGAAATTACACTTAGAATTTCAATTGGCAAAGCCAAGGAGGTGTCTAACATGGCTGGTACTCAAGTGCCCGTCAATTCAGTGCCCTTGAGAGAGAATACAAGTAGATGTAAAAACAATGCTGGTGAAGAAGCTACCAAAGAGCTAAAAGATTCACGCGAGAGTTGTAATGATGAAAATTCTCCCCTAACAAATGGACATTTGAGTCTTAAGGAAGATTCGGCAAGAAATGAAAACCAAAAACTGGGTCAGAAATCCCCGGCTCTAGCTAAACAGGAACTTGTAGAGGATGGTTTACAGAATAGCCCAACTCCCAGTTTACCAAGTTATATGGCGGCTACTGAATCTGCCAAGGCAAAGTTGAGAGCACAAGGGTCCCCAAGGTTGGGACAAGATGGTGGAGGTGAGAAAAGCAACATTACCCGGCGACATTCTCTGCCATCTTTGAATAACTGTAAAATTAGTTCGCATTCACCAAGAACACCGAGACCAGCTCAAGCAGGAGGCAAAGGGGGACACAGGAGTGGTGACAGAACAGTGGGTTCTTCCAGAGGAAAGTTAACTCAAGCAGAGTGGAGGAGGTGA 1872 0.4257 MGKSPGKWIKTVLFGKKSSKSNISKAREKLVKQKEAPIACKASETEFSFDPTPITFARNERDAELENKDPENLLLQNQVDIAGSDPQDTPYDPERIMQEEAATTVRFTLPPDLEKIKQEEAAMEMQATLPPDLDMIKQEEAAGKVQATFRGYLARRAFRTLKGIIRLQALIRGRLVRRLAISTLFCMYGIIKLQALVRGQIVRQSDVGYEMHGKCNLMKPLVEKCGDSVGLTTKIANMSANIFIHKLLASLTATTALRCQYAYGDPNAVLSWLECWSASHFWKPVPKPKKVLDSKSQNISNGDAQMNKPKRGNWKIPSTSSELVLVLENPDFENPKRSLRKVSSKPPVTNPVQENSENEFEKVKRNLRKIHNPVVENSAQSEVESETMKQHSEKIAVTSGYGVSEEGLKNCSNEKIKMDATSTMSDEPDGEITLRISIGKAKEVSNMAGTQVPVNSVPLRENTSRCKNNAGEEATKELKDSRESCNDENSPLTNGHLSLKEDSARNENQKLGQKSPALAKQELVEDGLQNSPTPSLPSYMAATESAKAKLRAQGSPRLGQDGGGEKSNITRRHSLPSLNNCKISSHSPRTPRPAQAGGKGGHRSGDRTVGSSRGKLTQAEWRR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1842 623 MobiDBLite consensus disorder prediction 526 623 - -
Lele22g1842 623 Gene3D - 137 183 - -
Lele22g1842 623 MobiDBLite consensus disorder prediction 526 540 - -
Lele22g1842 623 MobiDBLite consensus disorder prediction 292 314 - -
Lele22g1842 623 MobiDBLite consensus disorder prediction 570 591 - -
Lele22g1842 623 PANTHER IQ-DOMAIN 5-RELATED 1 584 - -
Lele22g1842 623 MobiDBLite consensus disorder prediction 337 359 - -
Lele22g1842 623 ProSiteProfiles IQ motif profile. 138 166 IPR000048 GO:0005515
Lele22g1842 623 MobiDBLite consensus disorder prediction 450 465 - -
Lele22g1842 623 SMART iq_5 160 181 IPR000048 GO:0005515
Lele22g1842 623 SMART iq_5 137 159 IPR000048 GO:0005515
Lele22g1842 623 Pfam IQ calmodulin-binding motif 162 178 IPR000048 GO:0005515
Lele22g1842 623 Pfam IQ calmodulin-binding motif 144 159 IPR000048 GO:0005515
Lele22g1842 623 Pfam Protein of unknown function (DUF4005) 516 604 IPR025064 -
Lele22g1842 623 MobiDBLite consensus disorder prediction 466 486 - -
Lele22g1842 623 MobiDBLite consensus disorder prediction 450 514 - -
Lele22g1842 623 MobiDBLite consensus disorder prediction 293 314 - -
Lele22g1842 623 ProSiteProfiles IQ motif profile. 162 184 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1842 Lele-ChrLele22 23408668 23412309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1842 1 623 IQD Protein Family AT1G74690 39.685 1.47e-106 332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1872 21 26113276 26116792 Lele22g1842 22 23408668 23412309 ECH
Lele22g1842 22 23408668 23412309 Lele22g1842 22 23408668 23412309 ECH
Lele22g1842 22 23408668 23412309 Lele23g0141 23 904710 909620 hybridization
Lele22g1842 22 23408668 23412309 Lele24g1794 24 23036338 23051823 hybridization