Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1839 ATGACGAAAGAAGAGCTTCAGAACGAAAATGATGACATGCTTATCGACGGATATCAACCTGAAGCGCCTGGGCAAAAGCAGGAAAGTCATGCTCCTAGCGAGTTCAATCCGGATCATCTTAAAGTATTTTACGGAAAGCTATTTCCTTTTGCTGATTTTTTTAGATGGATGTCTTACGGCAATGATGGGAAGCATCCTGGTTGCGACCCCTCTTACATCAGCCGGAGGGAATTTTCGTTCTCGCTTGACAACGATATATTTCTACGGTTCCAATCTTTCCACAGTGCCGTGGAGCTTGAAAACTCCATCAGAGAGAAATGCCCATTTAAGATTGATATTGGACCTGTGTATAGCGTGGAGCCCACAAAAAGGCATGCCTATACTCAGACTGGTGATAATGTCTTCGCTCCAGTTGAGAGAGAGCTAATTTTTGATATTGATATGACAGATTACGATGATGTCAGATACTGCTGCAATGGTGCTGATGTTTGCTTGAATTGCTGGCCATTGATGACCATATCTATTAAAGTGATTGATACCGCCTTAAGAGATGATTTTGGCTTTAAGCACATTCTATGGGTTTATAGTGGCCGCCGTGGTGTTCACTGTTGGGTCTGTGATGGGAAGGCAAGAAGGTTGACTAACGAGCAGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGAAATGAGAATAGTCATAAGAAGGTTTCATTGTCGGGTCATGCTCTTCATCCTTTCCTGGTGAGAGCATACACTGAAGTTCTTAAAGATTTTTTTGAGAAAGGACTACTAATAAGTCAAGCTTTACTTTCTACCGAAGAGAGATATGAGATGATCCTAGAGGTGATTCCAGACGCAGCTATTGCTTCTGAACTTCGGGGTAGATGGCAAGATAATAGGCGGTCTTCAAGTGCAAAAGAAGACATTAATGTTGTTCGATGGGAACAGCTCAAACATTTGCTGTCGAAGAATAAGGCACTAGGAGTGCGAAGGTGTGTTGAAGAGATTGTGTTCTCCTATACTTACCCTAGGCTAGATATGGAGGTTTCGAAGCACATGAATCACTTGCTTAAAGCTCCATTCTGTGTACACCCAAAAACAGGCCGCATTTGTGTCCCTATTGATCCAAATTGCTGTGAGGAGTTTGATCCTACCATAGTACCTACTCTTTCACAGCTTTTAGACGAGCTTAACGAAAGAGGTCCAAGAGATGATTTAGATGATGAATGGACAGGAACCTCACTTGAGGGTGCCGTCAGCCTTTTCAGAACGTCATTCTTACATCCCCTACTAAAAGCTTGCAAGGAGGAGATAGAAAGTTCCTATAATGCAAAATTGCAGCAGTCAAAAAACTCCTTTAACTGGTAA 1374 0.425 MTKEELQNENDDMLIDGYQPEAPGQKQESHAPSEFNPDHLKVFYGKLFPFADFFRWMSYGNDGKHPGCDPSYISRREFSFSLDNDIFLRFQSFHSAVELENSIREKCPFKIDIGPVYSVEPTKRHAYTQTGDNVFAPVERELIFDIDMTDYDDVRYCCNGADVCLNCWPLMTISIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYFRVYKGNENSHKKVSLSGHALHPFLVRAYTEVLKDFFEKGLLISQALLSTEERYEMILEVIPDAAIASELRGRWQDNRRSSSAKEDINVVRWEQLKHLLSKNKALGVRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRICVPIDPNCCEEFDPTIVPTLSQLLDELNERGPRDDLDDEWTGTSLEGAVSLFRTSFLHPLLKACKEEIESSYNAKLQQSKNSFNW 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1839 457 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 41 398 IPR014052 GO:0003896|GO:0006269
Lele22g1839 457 FunFam DNA primase 27 438 - -
Lele22g1839 457 Gene3D DNA primase, PRIM domain 26 438 - -
Lele22g1839 457 MobiDBLite consensus disorder prediction 1 33 - -
Lele22g1839 457 PANTHER DNA PRIMASE SMALL SUBUNIT 29 442 IPR014052 GO:0003896|GO:0006269
Lele22g1839 457 CDD AE_Prim_S 49 386 IPR014052 GO:0003896|GO:0006269
Lele22g1839 457 SUPERFAMILY Prim-pol domain 35 401 - -
Lele22g1839 457 Pfam DNA primase small subunit 144 377 IPR002755 GO:0003896|GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1839 Lele-ChrLele22 23388181 23393298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1839 1 457 Core DNA Replication Machinery Family AT5G41880 61.522 0.0 613