Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1829 ATGACCGGTGGGAGGGTCCTCATGGGTTCTCTTACTAATGCTTCCAATTTCGGCCTTTTGCTTCAAAATCAAGCCGCTCCTTCCTCTTCTGACTCTCTCGATGCCTTTTTCCTTTCTGGCTCTTCCTCTTCTTTCCTCGGTTCAAGATCCATGGTGAGCTTTGAAGATGTTAAACGAGGGAAAGGATGTAACCAGTCATTCTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGACTTGGATGAATGCTTTCATCAACCTGAGAAGAAGAGGCGGCTGACCGCTGATCAAGTCCAGTTTCTTGAGAAAAGCTTTGACGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAATCGCCGCGCGCGATGGAAGACAAAACAGCTGGAAAAGGATTTTGAATCTCTGCAGGCTAGCCATGACCGTCTTAAAGCTGACTATGATATCCTTCTCCAGGAGAAAGATAAATTAAAAGCTGAGGTTGCAAATCTCACAGAGAATGTACTTCTTAGAGAGAAACAAGAGGGGAACTACAAGCAGGGCGACACGAGCAAACTTAGAGAACCACAACAAGTGCAAAAGCCCTTGTTTGAGACTACTTCTGATGGTGAAGGCTCCAAAGTCTCTGTTGGGACATGCAAACAGGAAGACATGTGTTCATTAAAGAGGGACATATTTGATGCAGATAGCCCACATTACACTGATGGAGTTCACTCTGCGCTGCTGGAGCCTGGGGATTCCTCCTATGTATTTAAACATGATCAGTCAGATTTATCTCAGGATGAAGAAGACAACTTGAGCAAGAACTTATTTCCTCAATACATATTTTCAAAGCTTGAAGACGTTGACTACTCAGACCCGTCTGAAAGCTCATGCAGTTTTGGCTTACAAGCTGAAGATCATGGCGCCTTTTGGTCCTGGTCTTATTAG 984 0.4472 MTGGRVLMGSLTNASNFGLLLQNQAAPSSSDSLDAFFLSGSSSSFLGSRSMVSFEDVKRGKGCNQSFFSPFDHDENGDEDLDECFHQPEKKRRLTADQVQFLEKSFDVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARWKTKQLEKDFESLQASHDRLKADYDILLQEKDKLKAEVANLTENVLLREKQEGNYKQGDTSKLREPQQVQKPLFETTSDGEGSKVSVGTCKQEDMCSLKRDIFDADSPHYTDGVHSALLEPGDSSYVFKHDQSDLSQDEEDNLSKNLFPQYIFSKLEDVDYSDPSESSCSFGLQAEDHGAFWSWSY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1829 327 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lele22g1829 327 SUPERFAMILY Homeodomain-like 69 147 IPR009057 -
Lele22g1829 327 CDD homeodomain 90 146 IPR001356 GO:0003677
Lele22g1829 327 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Lele22g1829 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 227 IPR045224 GO:0003700
Lele22g1829 327 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Lele22g1829 327 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Lele22g1829 327 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Lele22g1829 327 FunFam Homeobox-leucine zipper protein HAT5 83 147 - -
Lele22g1829 327 SMART HOX_1 88 149 IPR001356 GO:0003677
Lele22g1829 327 Gene3D - 83 152 - -
Lele22g1829 327 Coils Coil 144 192 - -
Lele22g1829 327 Pfam Homeobox associated leucine zipper 145 185 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1829 Lele-ChrLele22 23327173 23328763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1829 27 272 Homeobox Transcription Factor Family AT3G01470 41.016 1.39e-46 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele22g1829 Homeodomain 1.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1854 21 26014847 26016447 Lele22g1829 22 23327173 23328763 ECH
Lele22g1829 22 23327173 23328763 Lele22g1829 22 23327173 23328763 ECH
Lele22g1829 22 23327173 23328763 Lele23g0156 23 988049 989611 hybridization
Lele22g1829 22 23327173 23328763 Lele24g1784 24 22974362 22975960 hybridization