Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1801 ATGACTATCGCCGGCGACGTTTTCAGGCTCAATTTTCCTCAAGTTCTCGATGAATCGCCTTCTTGTTCTGAGGAACTCCATGTTCTTGCCGTCGATGACAGTCACGTCGATCGTAAGGTCATCGAGCGCTTGCTCAAAATTTCTTCCTGCAAAGTAACGGTTGTGGATAGTGGAACCAGAGCTTTGCAATATTTAGGATTGGATGGAGAGGAGAACTCCATTGGGTTTAATAGCGCAAAGGTTAATCTGATCATGACGGACTATTCCATGCCGGGGATGACAGGATATGAACTTCTTAAGAAGATCAAGCAGGAGTCATCTATTTTCAGAGAGATTCCAGTGGTGATCATGTCTTCCGAGAACGTTTTGACACGAATTGATAGGTGTTTGGAGGAAGGAGCAGAGGAATTTCTATTGAAGCCAGTGAAGTTATCAGATGTTAAACGAGTGACTGATTTCATCATGAGAGGTGATAGGAAGGGAAAGGAGAAGAGATCTCAAAAGAGAAGGCGATCCGATGATCAATGTTTGTCTCCATCAACACTGCCCTTATCGAAGTCTCATCCATGTGATTCGTTATCGCCTCGACTGTCATCATTGTCACCATCGTCCTTGTCCTCCAAGAGATCAAGATTACAAGCAGATTTTGACTAG 654 0.4404 MTIAGDVFRLNFPQVLDESPSCSEELHVLAVDDSHVDRKVIERLLKISSCKVTVVDSGTRALQYLGLDGEENSIGFNSAKVNLIMTDYSMPGMTGYELLKKIKQESSIFREIPVVIMSSENVLTRIDRCLEEGAEEFLLKPVKLSDVKRVTDFIMRGDRKGKEKRSQKRRRSDDQCLSPSTLPLSKSHPCDSLSPRLSSLSPSSLSSKRSRLQADFD 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1801 217 MobiDBLite consensus disorder prediction 158 175 - -
Lele22g1801 217 MobiDBLite consensus disorder prediction 158 217 - -
Lele22g1801 217 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 183 IPR045279 GO:0009736
Lele22g1801 217 CDD REC_typeA_ARR 28 150 - -
Lele22g1801 217 SUPERFAMILY CheY-like 25 163 IPR011006 -
Lele22g1801 217 MobiDBLite consensus disorder prediction 176 211 - -
Lele22g1801 217 Pfam Response regulator receiver domain 28 148 IPR001789 GO:0000160
Lele22g1801 217 SMART REC_2 26 151 IPR001789 GO:0000160
Lele22g1801 217 Gene3D - 26 208 - -
Lele22g1801 217 ProSiteProfiles Response regulatory domain profile. 27 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1801 Lele-ChrLele22 23149870 23151398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1801 26 169 Response Regulator Gene Family AT5G62920 79.167 1.42e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele22g1801 Response_reg 6.9e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1801 22 23149870 23151398 Lele17g1009 17 20828400 20835102 CCT
Lele22g1801 22 23149870 23151398 Lele18g0528 18 3116616 3120832 CCT
Lele22g1801 22 23149870 23151398 Lele19g0549 19 3179945 3184203 CCT
Lele22g1801 22 23149870 23151398 Lele20g0901 20 15393839 15403056 CCT
Lele22g1801 22 23149870 23151398 Lele23g0183 23 1171059 1172473 hybridization
Lele22g1801 22 23149870 23151398 Lele24g1763 24 22808255 22809785 hybridization