Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1799 ATGGCCTCTTCTTCTGCTCTCCGAGATCCTTCCAGACACTACGCCTATAACCGCAAGCAAAAATCTCTTGGCCTCTTGTGCACCAATTTCTTGAGCTTGTATAATCGAGATGGCATTCACTTGATCGGCCTTGACGATGCGGCTGCGCGATTAGGTGTCGAGAGGCGGCGGATCTATGATATAGTTAACGTACTGGAGAGTGTCGGGGTGCTTGCAAGAAAAGCTAAGAATCAATATACTTGGAAAGGATTTGGAGCAATTCCAGGGGCCTTATTGGAGCTCAAGGAAGAAGGCTTAAGGGAGAATTGCGATGCTTTTGAGGGCGGTCATGATAGTGCAAAAGTATCAGACGATGAGGATGATGAAGAAACATTGTCCAATCCCAGTACTGGAAGTCAGAATGACAAGTCTTGTCCTACTTCTACTCTCGTAAAATCTATGAAAAATGATAACCGAAGAGAAAAGTCTTTGGCACTTCTCACTCAGAATTTTGTCAAGCTCTTTGTTTGCCATAATATGCAGATTATTTCCCTTGATGAAGCCGCCAGGTTGTTGCTTGGAGATGCCCATAATACGTCAATAATGAGAACTAAAGTAAGACGTCTATATGATATAGCAAATGTGCTGTCCTCCCTGAACCTTATTGAGAAGACTCATACATCAGACACAAGAAAACCTGCTTTTAGATGGCTGGGCTTGAAGGGGAAGACAGAGAATGAGTCTATTCACAATTCAAATCCCAAGGAGTCCAGGAAAAGAATATTTGGTAGCGATATCACAAACATCAATTTTAAGAGGAATAAAGTGGATTTATTCTCTAATGGGGACCCAAACCAGAATACTAAGATGCTAAACAAAGTGGATGGCGATAGTTGGCTTGGTCAGGCGGATAAAAGCCATCAAAATCAGGACTCAAAGCAGAGTTCAAGCAGCTATCAGTTTGGTCCTTTCGCTCCTGCCTTCGTCCCCAAACCGAGTGCCTCTGAGAATAATAATGCAAAGCGGGTCCACGATTGGGATAGTCTGGCAACTGCCTATCGTCCACAGTATCAAAACCAAGTTTTGAAAGAACTCTTCAGTCATTACATGGAAGCATGGAAATCATGGTACTCAGAAGTCGCAGGCAAGAGGCCAATCCATATTTTGTAA 1149 0.4326 MASSSALRDPSRHYAYNRKQKSLGLLCTNFLSLYNRDGIHLIGLDDAAARLGVERRRIYDIVNVLESVGVLARKAKNQYTWKGFGAIPGALLELKEEGLRENCDAFEGGHDSAKVSDDEDDEETLSNPSTGSQNDKSCPTSTLVKSMKNDNRREKSLALLTQNFVKLFVCHNMQIISLDEAARLLLGDAHNTSIMRTKVRRLYDIANVLSSLNLIEKTHTSDTRKPAFRWLGLKGKTENESIHNSNPKESRKRIFGSDITNINFKRNKVDLFSNGDPNQNTKMLNKVDGDSWLGQADKSHQNQDSKQSSSSYQFGPFAPAFVPKPSASENNNAKRVHDWDSLATAYRPQYQNQVLKELFSHYMEAWKSWYSEVAGKRPIHIL 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1799 382 MobiDBLite consensus disorder prediction 110 142 - -
Lele22g1799 382 FunFam E2F transcription factor 8 13 85 - -
Lele22g1799 382 MobiDBLite consensus disorder prediction 271 286 - -
Lele22g1799 382 MobiDBLite consensus disorder prediction 271 311 - -
Lele22g1799 382 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Lele22g1799 382 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Lele22g1799 382 MobiDBLite consensus disorder prediction 295 311 - -
Lele22g1799 382 FunFam E2F transcription factor-like E2FE 147 234 - -
Lele22g1799 382 MobiDBLite consensus disorder prediction 126 142 - -
Lele22g1799 382 PANTHER TRANSCRIPTION FACTOR E2F 11 351 IPR015633 GO:0000978|GO:0006357
Lele22g1799 382 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Lele22g1799 382 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Lele22g1799 382 Gene3D - 14 86 IPR036388 -
Lele22g1799 382 Gene3D - 147 234 IPR036388 -
Lele22g1799 382 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Lele22g1799 382 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1799 Lele-ChrLele22 23135051 23138160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1799 13 379 E2F-DP Transcription Factor Family AT3G48160 59.299 5.66e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lele22g1799 E2F_TDP 2.8e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1799 22 23135051 23138160 Lele22g1799 22 23135051 23138160 ECH
Lele22g1799 22 23135051 23138160 Lele23g0185 23 1185560 1189038 hybridization
Lele22g1799 22 23135051 23138160 Lele24g1761 24 22792799 22795867 hybridization