Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1795 ATGGGTCGTGGCAATGGCAAGCGCAGGTGGAGATTTTCCTTCCATCGTTCTTCTTCTTCTTCTTCTTCCGCTGATTCCAAGCTCGAACCAAAGGATCCCCCAAAGGAGTTTCTATGTCCAATTTCTGGGACTTTCATGTCCGACCCCGTTGTTGTTGCTTCGGGTCACACATTCGAACGTGTTGCAGTTCAAGTTTGCAGAGATTTGAACTTCTCCCCCAGCCTCGAAGATGGGTCTCAACCCGATTTCTCCACGGTCATTCCCAATTTGGCCATCAGAAGTACCATCTCTAATTGGTGCAAAAACTCCGGTGTGGAACTCCCTCGCGCGCCTGAATATAGCTCCGTCGAGAGGGTTGTACGCGTATCAATGGCGTCCCAACAGGACTCGCCAGATTTAAGGGTTTCTGAGAGGGAATTGCTGAAGGCGGTTGCGAACAACCCGCCGGTGAACACCTCCCACGCTGTCACCGAGTTGGGTCCTCGAGTTAACCACTTCGATTCGTGCTCGTCGGAGGAATCCGTAATCATAGTGCCCAGCCCCGGCACGCCTCTGCATCTAACCACTCGTCCCACCTGTTACTCTTCATCGTCGTCATCTTCCGTAACTGTCGAATCGGAATTTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGACAGATTAGTATCGAAGCTGAAAAGCAATGAGATTTTCGAGCAAGAAGAAGCCGTTATGTCACTGAGAAGCCTCACGAGGAACACAGAGGGCACCCGAATTTCTCTCTGCACCCCCCGTTTGCTTGACGCCCTACGATCTTTGATAGCCTCCAGGTACTCTATTGTTCAAGTGAACGCCGTCGCTTCGCTGGTCAATCTCTCCCTCGAGAAATCCAATAAGGTCAAGATCGTTCGGCGGGGATTCGTCCCCTATGTCATTGACGTCTTGAAGAGTGGATCCGATGAATCGCAGGAACACGCAGCGGGCGCCCTCTTCAGTTTAGCTTTAGACGACGACAACAAAATGGCCATCGGAGTTCTCGGCGCGTTTCAGCCACTCATGCACGCGCTAAGATCCGAGTCGGAGCGTACCCGAAGCGACTCGGCGCTCGCGTTGTATCACCTGACCTTGGTACAAAGCAATCGGGTTAAGCTGGTGAGACTCGGGGCAATTCCGACTCTACTCGCGATGTTGAATGCAGGTAAATTGACGAGCCGAGTCTTGCTAATTCTCTGTAATCTAGCTGTGTGTACGGAGGGGCAATCGGCGATGCTGGATGGTAATGCTGTGGAGTGCTTAGTGAGTTTATTAAAGGGGAAAGAGTTGGACTCGGAGTCGACTCGTGAGAACTGTGTTGCTGCGTTGTATGCGCTTAGCCATGGAAGCTTGAGGTTCAGAGCAGTGGCGAAGGAGGCAAGGGTTATGGAGGGTTTGAAGGAGATTGAAGAGAAAGGTACAGAGAGAGCCAGGGAGAAAGCGAGGAGGATAGTGCAGATGATGCGGGCGGGAGGAGATGACGAAGATGGAAACGGGTCGAATTTTGATTTGGACTCGGGCGGGCTGAACAGGAATCGGTTCAGAGGGAGGAATATCAACATTGCGAACTCAACTGCATTTTAG 1599 0.5166 MGRGNGKRRWRFSFHRSSSSSSSADSKLEPKDPPKEFLCPISGTFMSDPVVVASGHTFERVAVQVCRDLNFSPSLEDGSQPDFSTVIPNLAIRSTISNWCKNSGVELPRAPEYSSVERVVRVSMASQQDSPDLRVSERELLKAVANNPPVNTSHAVTELGPRVNHFDSCSSEESVIIVPSPGTPLHLTTRPTCYSSSSSSSVTVESEFQNPNGPISEEEDRLVSKLKSNEIFEQEEAVMSLRSLTRNTEGTRISLCTPRLLDALRSLIASRYSIVQVNAVASLVNLSLEKSNKVKIVRRGFVPYVIDVLKSGSDESQEHAAGALFSLALDDDNKMAIGVLGAFQPLMHALRSESERTRSDSALALYHLTLVQSNRVKLVRLGAIPTLLAMLNAGKLTSRVLLILCNLAVCTEGQSAMLDGNAVECLVSLLKGKELDSESTRENCVAALYALSHGSLRFRAVAKEARVMEGLKEIEEKGTERAREKARRIVQMMRAGGDDEDGNGSNFDLDSGGLNRNRFRGRNINIANSTAF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1795 532 CDD RING-Ubox 38 74 - -
Lele22g1795 532 FunFam RING-type E3 ubiquitin transferase 14 107 - -
Lele22g1795 532 PANTHER U BOX DOMAIN-CONTAINING 25 494 - -
Lele22g1795 532 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Lele22g1795 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 300 337 IPR000225 GO:0005515
Lele22g1795 532 MobiDBLite consensus disorder prediction 1 33 - -
Lele22g1795 532 Gene3D - 216 494 IPR011989 -
Lele22g1795 532 SUPERFAMILY ARM repeat 221 492 IPR016024 -
Lele22g1795 532 FunFam RING-type E3 ubiquitin transferase 217 493 - -
Lele22g1795 532 Pfam Armadillo/beta-catenin-like repeat 330 369 IPR000225 GO:0005515
Lele22g1795 532 Pfam U-box domain 34 102 IPR003613 GO:0004842|GO:0016567
Lele22g1795 532 SUPERFAMILY RING/U-box 20 108 - -
Lele22g1795 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 107 IPR013083 -
Lele22g1795 532 SMART arm_5 289 329 IPR000225 GO:0005515
Lele22g1795 532 SMART arm_5 330 370 IPR000225 GO:0005515
Lele22g1795 532 SMART arm_5 410 453 IPR000225 GO:0005515
Lele22g1795 532 SMART arm_5 371 409 IPR000225 GO:0005515
Lele22g1795 532 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1795 Lele-ChrLele22 23096466 23098064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1795 1 532 U-box Gene Family AT5G65200 56.328 0.0 561