Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1782 ATGAGCCCCGTGTGGAGCAATGCTCTTGTGTTGAAAGGGCAAGATCGATCGTGGATTTATGATGGATTCCCTGTCCTTGGGTTTGAGTGGCAGAAATTGGAAAATCCTGATCTGCGAATGGCAATGGGCATGAGATCTGATCAGGAGGGGTTTAACAATGAAGTCACAGGTTATCTGGGTGCTTTTGCCCTTATGCCCTTTGTGATTTTAGGTAGTACTGATGGGATATCTTTGTCAGTTACTCATCTCTCCGGTGGATGGCATGATATTTCCACTTCGCCATGGAGAGCTCATTGGTTTCAGTTATCTTATATCTCAGAAATACACTGGGTGCCGGTAGCTGATATAAACATCGGGTATGAAGATATTGTTAATACTCAGGTACTTGCTTTTAATGGTAAACCTGTGAAAAACCTGAAGAGCTTGGCCAGCATGGTTGAGAACTGCAATGATGAATATCTAAAATTCAATCTAGAGTTCATTCGCCAGCCCAAGCATATCCACGTGTCCAGCAATGAAGAGCGCTACGTCGACCTTAAAACTTTAAAGGCTATACCCGCTTCACTCCGTACGGTTGTTCGGGGCGTGCTTAACTTGCCATTGAAAGACTGTATCACGGTCGCTTCAAATTTTTCCACGCAGACTTTGGACTATTTCTCCCTCAATTCTCAGCTTTGTATGGAGAAGATGGGTACTGATGATCGCAGTTTGGAAGAATTTTTCGAAGAGAAGAAGCGCGTTAGGAACCCTCTTGTGCCCATTGGTGCACTTATTACTGCTGGTGTGCTCACGGCTGGATTAATCAGTTTCAGACAAGGCAATTCTCACTTGGGTCAGAAATTAATGAGGGCCCGTGTGGTTGTCCAAGGTGCTACAGTGGCCCTTATGGTTGGCACTGCGTACTATTATGGCGAAAATCCTTGGCGATCGACCCTACTTTTCAACTTGTGTTTTACACCGGCAACGATATTAAGAGACAAGGACACGATAAATTCAAGTCACAGCTTTGGTGCAGTAGCTGATCGTACTGCTAAGCATGCAAAGAAGGAAGACATAATTGGAAGCTGGTCAGGTGCTAAAGAGAGTGGAAGTGAGGAGAATGTCAGTGAAGAAGGAAGCGGATCAGCTAGTTGGGAGCTGAACACCAAAGCAGCATATACAAAATGGCTACTAAAGCAACTTTTGGACAGACATAATCATAGGCAACATTGGGATGACATGCGTGTAAAGAAAAGGAATATGGGATCCCACCATCCAATATCTGTCAAAATGCCCAGCGTTCCACATAAGACTCAGCAAATAGGTGATAGCTTGAAGTACTCATCCCCTGAATCGCCTTTCTCTTCATTCCAAGCTCCTTATTACATTACTATAAATGAGAAAGAAGAACCATCTCCTTCATCAACAGTAAGCAAAATCAGCCCACTTATTCTATTAGTAATCATTGTTCTAGCAGTCATCTTCTTCGTATATGGCATCGTTCATTTGGTTCTCTGGCTTCTAATGAAAACTCCATCAGCATCTTCACCTCTATCTCATTCCAATAGATTTCCAGAATCCACGCGCTCTCGTGCTTTTCAAAGGCAGCTTCATCATCTCTTTCGCTTACATGATTCAGGATTAGAACAGTCTCTTATAGATGCTCTTCCTGTTTTTTACTACGAGGATGTCTTAGGTTTGAAAGAACCCTTTGACTGTGCTGTGTGTCTCTGTGATTTCTCGGAGCATGACAAGCTGAGATTGTTGCCAATGTGTGGCCATGCTTTCCACATCACTTGTCTTGACACGTGGCTTCTCTCAAACTGTACATGCCCTCTTTGCAGAGTGACAATCTCATCAAGTTCCAATTTTTCCATGGAAAACCCATTATTCAACAATGATAATTCATGGGTTTTGAACAGATTCAAAGGAGATGAAGAGAATGTCAATGGGTGTTCATCAGATACTGAGAGAATTACCGAAAAAAGGGTTCTTTCTGTGAGGCTTGGGAAGTTCAGAAACATTGATGGAGGAGAATTAGAGGTTGAAGAAGAAGAGGGTAGTAGTGGTAATATGGATGGAAGGAGATGTTTCTCCATGGGTTCGTATCAGTATGTGGTGAGTGGTTCAAATCTGCAAGTGGTTCTTTCTGACGTTTCAGACAATGAGGATGATGCTGTGGAGGGTAAGAAGATAAGAGAGAGAATTAGAGGTGAGAGCTTCTCTGTGTCAAAGATATGGCTTTGGTCCAACAAGAGCAAGTTTCGAAGCTCTTCTGATGATGATGCTTTACCTTGGTTACTGTAA 2286 0.4296 MSPVWSNALVLKGQDRSWIYDGFPVLGFEWQKLENPDLRMAMGMRSDQEGFNNEVTGYLGAFALMPFVILGSTDGISLSVTHLSGGWHDISTSPWRAHWFQLSYISEIHWVPVADINIGYEDIVNTQVLAFNGKPVKNLKSLASMVENCNDEYLKFNLEFIRQPKHIHVSSNEERYVDLKTLKAIPASLRTVVRGVLNLPLKDCITVASNFSTQTLDYFSLNSQLCMEKMGTDDRSLEEFFEEKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRARVVVQGATVALMVGTAYYYGENPWRSTLLFNLCFTPATILRDKDTINSSHSFGAVADRTAKHAKKEDIIGSWSGAKESGSEENVSEEGSGSASWELNTKAAYTKWLLKQLLDRHNHRQHWDDMRVKKRNMGSHHPISVKMPSVPHKTQQIGDSLKYSSPESPFSSFQAPYYITINEKEEPSPSSTVSKISPLILLVIIVLAVIFFVYGIVHLVLWLLMKTPSASSPLSHSNRFPESTRSRAFQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVLGLKEPFDCAVCLCDFSEHDKLRLLPMCGHAFHITCLDTWLLSNCTCPLCRVTISSSSNFSMENPLFNNDNSWVLNRFKGDEENVNGCSSDTERITEKRVLSVRLGKFRNIDGGELEVEEEEGSSGNMDGRRCFSMGSYQYVVSGSNLQVVLSDVSDNEDDAVEGKKIRERIRGESFSVSKIWLWSNKSKFRSSSDDDALPWLL 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1782 761 Pfam Hypoxia induced protein conserved region 249 298 IPR007667 -
Lele22g1782 761 MobiDBLite consensus disorder prediction 354 375 - -
Lele22g1782 761 FunFam E3 ubiquitin-protein ligase ATL6 529 614 - -
Lele22g1782 761 Pfam Ring finger domain 565 608 IPR001841 -
Lele22g1782 761 MobiDBLite consensus disorder prediction 360 375 - -
Lele22g1782 761 CDD RING-H2_PA-TM-RING 565 608 - -
Lele22g1782 761 Pfam PDZ domain 113 159 IPR041517 -
Lele22g1782 761 SUPERFAMILY RING/U-box 545 614 - -
Lele22g1782 761 SMART ring_2 566 607 IPR001841 -
Lele22g1782 761 Gene3D - 249 308 - -
Lele22g1782 761 ProSiteProfiles HIG1 domain profile. 217 314 IPR007667 -
Lele22g1782 761 ProSiteProfiles Zinc finger RING-type profile. 566 608 IPR001841 -
Lele22g1782 761 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 469 740 - -
Lele22g1782 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 541 617 IPR013083 -
Lele22g1782 761 Gene3D - 108 189 IPR046449 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1782 Lele-ChrLele22 23006226 23017147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1782 461 755 C3H Transcription Factor Family AT2G18650 41.228 3.62e-53 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1782 22 23006226 23017147 Lele23g0201 23 1328547 1335039 hybridization
Lele22g1782 22 23006226 23017147 Lele24g1741 24 22651524 22663735 hybridization