Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1777 ATGGTGCACGTTTCCTTCTACAACAGCTATGGGAAAACATTCAAGAAGCCTCGTCGTCCATATGAGAAGGAGCGCTTGGATGCTGAGTTGAAGCTTGTGGGAGAGTATGGACTTCGCTGCAAAAGGGAGTTGTGGAGGGTTCAGTACGCTCTGAGTCGTATCCGTAATAACGCAAGGGAGCTTTTGACCCTTGATGAGAAGAACCCACGTCGGATCTTCGAGGGTGAAGCTCTTCTGCGTCGTATGTTTCGATATGGGCTTCTAGATGAGAGTCAGAACAAGCTCGATTACGTCTTGGCTTTGACCGTTGAGAACTTCCTTGAGCGTCGTCTTCAGACCCTTGTGTTCAAATCTGGGATGGCCAAGTCAATCCATCATGCTAGGGTCCTCATCAGGCAGAGGCATATCAGGGTTGGGAGGCAGGTGGTGAACATCCCATCATTCATGGTGCGAGTTGATTCCCAGAAGCACATTGACTTCTCACTCACAAGTCCATTCGGAGGTGGACGCCCTGGAAGAGTGAAGAGAAAGAACCAAAGGGCTGCTGCCAAGAAGGCTTCTGGCGGAGATGGAGATGAGGAGGATGAGGAGTAA 594 0.5034 MVHVSFYNSYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARELLTLDEKNPRRIFEGEALLRRMFRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQRAAAKKASGGDGDEEDEE 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1777 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Lele22g1777 197 Pfam Ribosomal protein S4/S9 N-terminal domain 11 108 IPR001912 GO:0019843
Lele22g1777 197 SMART s4_6 109 180 IPR002942 GO:0003723
Lele22g1777 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 12 183 IPR022801 GO:0003735|GO:0015935|GO:0019843
Lele22g1777 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Lele22g1777 197 CDD S4 109 153 - -
Lele22g1777 197 ProSiteProfiles S4 RNA-binding domain profile. 109 183 - -
Lele22g1777 197 Gene3D - 108 165 IPR036986 GO:0003723
Lele22g1777 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Lele22g1777 197 TIGRFAM uS4_arch: ribosomal protein uS4 12 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
Lele22g1777 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Lele22g1777 197 MobiDBLite consensus disorder prediction 163 197 - -
Lele22g1777 197 FunFam 40S ribosomal protein S9 108 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1777 Lele-ChrLele22 22979071 22980696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1777 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 91.979 3.16e-127 354