Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1772 ATGAAGAACGCAACTAGTGACTCATCCTCAAAATTGGATCGCAAGACAATAGAAAGGAATCGCAGAATTCACATGAAAGCGCTTTGCGTCAAGCTCGCTTCTCTTATTCCTCCCCACTACTTCAAACACACCAAGGACATGATATCGCAGCAAGATCAGCTGGATATAGCAGCGAGCTTCATAAAGAATCTGAGGGAGAAACTGGAGAAGCTGAAGAGGAAGAAGGAGGAAGCCAGAAATCAAAGGAAAAACAAGGGAATTATGGAGAACATGTTCATGGCTTCGAATCTGCCACTTCTTGAGCTCAGAGATTTAGGTTCTACAATAGAAGTGATGCTGATCAGTGGATTGAACAGAAACTTCATGTTATATGAAGTAATTAGCGTCCTCGAACAAGAAGGAGCTGAAGTTGTGAGCGCTAGCTTTTCCACTGTTGGGGATAAGATCTTCCACACTGTTCATGCCCAGGTGAAAATATCAAGAGTTGGTGTAGAAACTACAAGAGTGTATCAGAGGCTTCACGATTTGATCGCTCCACTTAGAAGCTAG 549 0.4299 MKNATSDSSSKLDRKTIERNRRIHMKALCVKLASLIPPHYFKHTKDMISQQDQLDIAASFIKNLREKLEKLKRKKEEARNQRKNKGIMENMFMASNLPLLELRDLGSTIEVMLISGLNRNFMLYEVISVLEQEGAEVVSASFSTVGDKIFHTVHAQVKISRVGVETTRVYQRLHDLIAPLRS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1772 182 Coils Coil 54 88 - -
Lele22g1772 182 Gene3D - 2 90 IPR036638 GO:0046983
Lele22g1772 182 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Lele22g1772 182 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 13 81 IPR036638 GO:0046983
Lele22g1772 182 SMART finulus 15 70 IPR011598 GO:0046983
Lele22g1772 182 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 7 175 IPR015660 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1772 Lele-ChrLele22 22941374 22942132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1772 3 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.275 4.25e-26 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele22g1772 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0517 19 2981591 3006195 Lele22g1772 22 22941374 22942132 CCT
Lele21g1796 21 25621275 25622156 Lele22g1772 22 22941374 22942132 ECH
Lele22g1772 22 22941374 22942132 Lele22g1772 22 22941374 22942132 ECH
Lele22g1772 22 22941374 22942132 Lele23g0212 23 1411059 1412346 hybridization
Lele22g1772 22 22941374 22942132 Lele24g1732 24 22590536 22591291 hybridization