LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g1758	ATGGATCTGCAGGATACAAATTTCAGAGAAAACTATGTCTACCAGCAGCCAATGCTTCAGTTGCAAGAGGTGGAGACAAAATCCAACGTAAAAGATCTCGTGCTTCCTTCATCACAGGGTAATTTCTTGCAAGATTTACTCCATATAGATCCATTTCAAGTATATGGGTCTTCATCAAATCCAGTTCCTGGAATCCAAACTGCAAACTTTGTTAACCCTTTTGATAGTTTCTCATTTGGCTGTTCATCAACATCAGCAGATTTTGATGTTTATGAGTCAAAACCATTTACTGAAAATATTAATGGCAATAATAAAGGGCATGCGCATGTAGTTATGGAGAATAATTTCCAGTTCGGAGGTAATAAGAATTATAGCCTCAACGTCTCTCACGAGAGGAATCAAATGGAAATGGTGGATTATGCAGAGCTGAGCAATTATTATTTGCCGTTTGATTCTCAAGAAACCAATAAGCCTATGAATTTTGTTGCACCAGACGATGAAGTCTCAATCATATCTGCAGATCATAGTTTTCTCAGAAGGGTTGGTTTGAATAATAATAAGAGTAGCAGGTTATCAACTTCAATCAGAAGGGCATGCAAAGTTCGGAACAAGTCCAACGTAGTAAAGGGACAATGGTCGGTGGAAGAAGATAGGCTGCTAGTTCAACAGGTTGAACAATACGGAGTGAGAAAGTGGTCTCATATTGCTCTGAGTTTGCCTGGGAGAATAGGCAAACAATGTCGAGAGCGTTGGCATAATCATTTAAGGCCTAACATTAAGAAGGACACATGGAGTAGTGAAGAGGATAAGATACTGATCGAAGCACACGTAGAGATAGGAAATAAATGGGCAGAGATTGCTAAGAAGTTGCCTGGAAGAACTGAAAACTCCATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCAAAAAGAAAGTGTCGCTCAAAGCAACCTAAACCCTCTCTTCTTCAGGATTACATCAAGAGCTTGAACTTAGACAAAAACCCTCCCCTAGATTATCGCAAAAGCAGAAGATCCTCTTGTTCTGCTAATAACCTTAATAACTACAATACAAGGAAAGCATCATCAGCAACACCAGCAACTGAGCAGTTTTGTCCCGACAATGGCAGATTGGTTCCTACATATGACTTTAACGAGGTCCCAGACTTTTGTTTCGATGATGACAACATAACTTTGTTTCAAGAGGGGTGCAATCTTGATTCTTTGCTTGATGATATGCCTTGTGCTTCTGATGATCATACTGTGCATGGAGGAGACTTTGAAGCAAAGTTGCAATATTGTGGCGATGATGTTGTTGTTCATAATAATAATATTGATCTTGATGATGGGGATGATGATGATGATGATCAGTTTGATTCACAGAATGAGGAGGTGGAAGTTAAGAAGGAGATGGATTTGATGGAGATGATGTCTCAGATCAGAGATGTTCTTTGA	1461	0.3922	MDLQDTNFRENYVYQQPMLQLQEVETKSNVKDLVLPSSQGNFLQDLLHIDPFQVYGSSSNPVPGIQTANFVNPFDSFSFGCSSTSADFDVYESKPFTENINGNNKGHAHVVMENNFQFGGNKNYSLNVSHERNQMEMVDYAELSNYYLPFDSQETNKPMNFVAPDDEVSIISADHSFLRRVGLNNNKSSRLSTSIRRACKVRNKSNVVKGQWSVEEDRLLVQQVEQYGVRKWSHIALSLPGRIGKQCRERWHNHLRPNIKKDTWSSEEDKILIEAHVEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKQPKPSLLQDYIKSLNLDKNPPLDYRKSRRSSCSANNLNNYNTRKASSATPATEQFCPDNGRLVPTYDFNEVPDFCFDDDNITLFQEGCNLDSLLDDMPCASDDHTVHGGDFEAKLQYCGDDVVVHNNNIDLDDGDDDDDDQFDSQNEEVEVKKEMDLMEMMSQIRDVL	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g1758	486	PANTHER	MYB PROTEIN-RELATED	186	347	-	-
	Lele22g1758	486	FunFam	Transcriptional activator Myb isoform A	208	261	-	-
	Lele22g1758	486	Gene3D	-	262	327	-	-
	Lele22g1758	486	SMART	sant	260	308	IPR001005	-
	Lele22g1758	486	SMART	sant	208	257	IPR001005	-
	Lele22g1758	486	ProSiteProfiles	Myb-like domain profile.	256	306	IPR001005	-
	Lele22g1758	486	MobiDBLite	consensus disorder prediction	342	370	-	-
	Lele22g1758	486	ProSiteProfiles	Myb-like domain profile.	204	255	IPR001005	-
	Lele22g1758	486	MobiDBLite	consensus disorder prediction	344	370	-	-
	Lele22g1758	486	Pfam	Myb-like DNA-binding domain	212	270	-	-
	Lele22g1758	486	Gene3D	-	208	260	-	-
	Lele22g1758	486	CDD	SANT	263	306	IPR001005	-
	Lele22g1758	486	MobiDBLite	consensus disorder prediction	297	321	-	-
	Lele22g1758	486	CDD	SANT	212	255	IPR001005	-
	Lele22g1758	486	FunFam	Transcription factor MYB119	262	326	-	-
	Lele22g1758	486	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	204	259	IPR017930	-
	Lele22g1758	486	MobiDBLite	consensus disorder prediction	305	319	-	-
	Lele22g1758	486	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	260	310	IPR017930	-
	Lele22g1758	486	SUPERFAMILY	Homeodomain-like	206	302	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g1758	Lele-ChrLele22	22835108	22837374	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g1758	61	426	MYB Transcription Factor Family	AT4G18770	48.942	8.35e-97	297

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele22g1758		Myb_DNA-bind_6	2.6e-17	CL0123