Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1729 ATGGGTCGTCATTCCTGTTGTGTAAAGCAAAAACTGAGAAAGGGCCTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCGATTACATTACCAGATATGGCGTTGGCTGCTGGAGTTCTGTTCCCAAACTCGCGGGGTTGCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAATTATCTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAACAAGAAGAAGATCTCATCCTCAGACTTCATGAAGTTCTTGGCAATAGGTGGGCTCAGATTGCGGCACAGTTACCAGGAAGAACAGATAATGAGATAAAGAACTTCTGGAACTCAAGTCTGAAGAAGAAGCTGCTGAAGCAAGGGATTGATCCAACCACACACAAGCCTCTAATTATCACAGAACCTTCTCATCATCAATCATCAATAAAGGAGGAGGAGAAAAGTCTCACATCAAATTCATCTCTGCAGATTCCATTCTCATCAGTGATCTCAGCTCCAACAACAACATCCTTAGGCTTCTCATCATCATCATCACTTTTAGGAAGCGATAATTCCAACCATTTTGAGAATAATATTAATGGTTATGATCCATTGGCCTTCTTTGAGTTCCAAATGGCGGGTTTGAACCAATCTGGGTTCGGATTCAACATGTCCTCCATAATGCCAGGTCTAATCAGTGCAAATTCCATGACGGAGTTATCCTCGGAAAACAATTCGGGTTCGAGAATCAGTTCAAGCAATAGCTTGAGCAGCTATGTCCAAGGAGGAGGGTGTCAACAGATAAGTAACAGTAGCTTACTGGTGGATCCATTATTGTATGATCAGTTTCAAGCAGTGAATGGTAATATAAAGAACGAAGAAGGTGATTTTCAGACGTTGATGAAGACGACGATGTCGTCGTCGTGGGAAGAAGATGACGGTGGGCCGATTCTGAATCAAAGCTCCATAGATTTCAACGCCACCTATCCGTTAACGTCACTGTCAGAAGATCTAAGGCCAGCGAGTTTTGATGCTTTCCACCATATGTGA 1026 0.4308 MGRHSCCVKQKLRKGLWSPEEDEKLFDYITRYGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLILRLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLLKQGIDPTTHKPLIITEPSHHQSSIKEEEKSLTSNSSLQIPFSSVISAPTTTSLGFSSSSSLLGSDNSNHFENNINGYDPLAFFEFQMAGLNQSGFGFNMSSIMPGLISANSMTELSSENNSGSRISSSNSLSSYVQGGGCQQISNSSLLVDPLLYDQFQAVNGNIKNEEGDFQTLMKTTMSSSWEEDDGGPILNQSSIDFNATYPLTSLSEDLRPASFDAFHHM 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1729 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lele22g1729 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lele22g1729 341 FunFam MYB transcription factor 68 129 - -
Lele22g1729 341 SMART sant 13 63 IPR001005 -
Lele22g1729 341 SMART sant 66 114 IPR001005 -
Lele22g1729 341 PANTHER MYB DOMAIN PROTEIN 55 1 258 - -
Lele22g1729 341 FunFam Myb transcription factor 11 67 - -
Lele22g1729 341 CDD SANT 70 112 IPR001005 -
Lele22g1729 341 Gene3D - 11 67 - -
Lele22g1729 341 CDD SANT 17 61 IPR001005 -
Lele22g1729 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele22g1729 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele22g1729 341 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Lele22g1729 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele22g1729 341 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele22g1729 341 Gene3D - 68 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1729 Lele-ChrLele22 22639559 22640760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1729 1 174 MYB Transcription Factor Family AT1G57560 66.477 7.80e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele22g1729 Myb_DNA-binding 2.7e-14 CL0123