Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1689 ATGCGATGGTTGCGTTGCGGCAGCCTTTATTGGTCGATTGAGGCCTTTCCAGTCATATCACTACACGTGTAAACACGAGTCTCCTTCACCGAGTCTTCAGCTAGTAAAAATATGGCGGGTTCGGCAGCTCTGGCTCCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTAGCTCCAGAGTACCGCCCTACCTTGGCTGAGTTCCAAGATCCGATATCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAATATGGAATATGCAAAATTGTTCCCCCCGTGCCACCTTCTTCGAAAAAGACAGCACTTGCAAATCTTAATCGCTCGTTGGCGGCACGAGCTGCTTCTTCGGACTCTTCTAATCGGAAATCCCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGGCCGGCGCAGCGTCCTGTGTGGCAGAGTGGGGAATACTACACTTTTCAGGAATTTGAAGCGAAGGCCAGGGCTTTTGAGAAGAATTATCTAAAGAAATGGGCTAGGAAAGGTGGGCTCTCGCCTCTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGTTCGGCTTTTGTTCCCATGAATGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTGTCACGGGCAAATAGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACATCACCGATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCATATGGGGGCAGGCAAGACTTGGTATGGCGTGCCGCGGGATGCAGCTGTGGCATTTGAGGAAGTGGTCAGAGTTCATGGTTATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTACTTGGTGAGAAAACCACTGTGATGTCGCCTGAAGTATTTATTGGTGCAGGGGTTCCGTGCTGCAGGTTAGTGCAAAACGCTGGAGAATTTGTTGTCACGTTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCCAACATTGCGACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTAGGAGGGCGTCAATAAATTACCCGCCCATGGTCTCACATTTCCAGTTACTTTATGATCTTGCCTTGGCTTTGCGTTCGAGAATATCTGGGGGCATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATGACTTGATTCATGGTCTTGGTAAAGGATCTTCTATAGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGCGTTGGTTCCCAGCAGCTGAAGGTGAACCCTGGGTATTCTCCCAGTGCCTGCAATTCTGAGGGAGTGAATTCTTCAAAAGATTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAAGGATTTTATTCAGTAAAAGAGAAGTTTGCTTCTTTGTGTGAAAGGAACAGAGTCTCATTAAGTGTAAATGATAACTTATGCTCTTCAAGTTCTGTGCCACTTCAAAGAGACACTGAAAGAGAGACAAGCCAAGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACTTGTGGCATATTAAGCTTTGCTTGTGTTGCTATTGTTCAGCCTAGGGAGCCAGCAGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAAGCATCAATAAGTTTACACATGCCCATGGAGATGCAACTACTTCTGAGAAAAACACCTTTGCAGGATGGAAGGTCAAAACGACCCCAGACTATGATCTTCCTGATCAATCTGTAGGATACCAGGTACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTACTAAAGGACGAAAAGAAACATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAGGCTGACCCGGATATTGCAGTTCGTGATAATGATTCTGATGTTATGAACCGTCCATCAGGTAGTATGTCTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCAATGCAAGTGCAGTCAGGGTTCATGTTGATTATGAGCAAAAAGCAAACTCAGAAGGTTGTGATACCGCGTTTAAGAATACGAGTTGTACCTTAAATTATTCTCAAGATGGTCGTGAGGCTGAAACATCAATGCTTCGTAACTCTGGATGTCCCATTGATAATAGAAGTGCTTCATTGTTGCCACATTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCTGAAGTGGAGCAGCAGCTTCACTCAATAGGAGGAGCACAAATATTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCAAGAAATGTGGCAGAAGAACTGGGTATTGATGGCATATGGAAGGATCTTGATTACAGAAATGCCACCCCTGAAGATGAGGAGAGGATCCAGTCGGCTCTGGATAGTGAGGAGGCTATTCCTGGAAATGCAGATTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGTGCCAACCTTAGCCGCTCTCCTCTCTACAGTAAACAGATGCCTTACAATTCTGTCATATACTATGCATTTGGCCGTAATGCTCCAGCAGGCTCAACCACAGAACCCAAGGTTTACCAAAGAAGGTCCAGCAAGCAGAAAAAGGTGGTTGCTGGAAAATGGTGTGGTAAAGTTTGGATGTCAAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGAGAAAATCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGAGAATATGTTTCGCTGCTAGAAAATTTCTCTAAGAAAAGGAAAACGACTGTGGAGAGTAGAAAAGCCTGGAAAACCAGTTTTGCTGAGGGAGAATATGTTTCAGATAATTCAATTGAAGAGAAATACAATCCGCAGCAAAGGACATATTCTAGAAGCAAGCAAGCCATATATTTTGACAAAGATGATGCAGCATCAGAAGAGGATTATTCTCCTCTGCAGCAATATAGAAAACCTACAATAAAGCAAGCCAAATACAGCGAAAGTGATGAAGTTTCAGATGATTCAATGGATGATAATGCTAACATGCAGCATGGAAGGAATTTCAAATTCAAAGAACCTAAATTTATTGACAGTGATATTGTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTAGCAACAAACAAATTGAAGACTCTGAAAGAGATGGAATTTCAGAGGATTCGATGGGTGGTAGTTCTCTTAAGCGGCGGAGGAAGACTTGTAAAAGCAAGCCAGCGAAATATTTTGCTAGAGATGTAACTTCTGATGACCAAATGGAGGATCATTTTCAGAAGCAGCCAAGAAGGATTCCTAAAAGCAGACAAGCCAAATACCTTGATGCAGAAGATATCATGGTATCTGATGACCAAGTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGCAGGCGAGCCAAATACCTCGCTGGAGAGGAAATTACATCTGGGGACCAACTGGAGGACCATTCTGGCAAGTGTCATAGGAGGATTCGTAAAAGCAGACAAGGTAAATGCCTCGTTGTGGAAGATGTAATGTCTGATGACCAATTAGAGGATCACTTTCAGAAGCCACGTGGTACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCCAGTTAAAAGCATGAGTGAAGAAGACATAAACTCTGATGATCAAATGGAGGATTCATCTCATCAGCAGCGAAGGAGGGTTCTTCGAAGCCAGCAATCTAAATTAGAGGCACAACAAGAAATGAAACAATCTAACTCTTGCCATGTGAAAGAACAGACATCCCGGCCTCTAAAACGGGGTGCTCAGCTGCTAGTAAAACCAAAGACTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAGTCATCCTAATAACTTCAGAGATTTTAACTTATGTTCAGAAGAGGAGGAGGAAGGTGGACCCAGCACACGCCTTAGGAAGAGAGTACCAAAAGTTGAGGAGTCTGAAGCAAAACCGAAAGAAAAGGTAACCCAAAGGAAGAAGGTGAACAATTCTACAGCTTCGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGGTGCACTATGAGTTTTAGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGCGGGAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCACGAGGATGACCGCCCTCTGAGGTGTCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACCGGGGCTCGTCCATATGTTTGTGCTGAGCCAGGGTGTGGACAGACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGCCATTCAGCAAAGAAGAGTCGTTAA 4767 0.4412 MRWLRCGSLYWSIEAFPVISLHVXTRVSFTESSASKNMAGSAALAPEPNSEVFSWLKSLPLAPEYRPTLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTALANLNRSLAARAASSDSSNRKSQPTFTTRQQQIGFCPRKQRPAQRPVWQSGEYYTFQEFEAKARAFEKNYLKKWARKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPMNGRKYREAGEGMTLGETAWNMRGVSRANSSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAVLGEKTTVMSPEVFIGAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALRSRISGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNDLIHGLGKGSSIVLLPRSSSDISVCSKLRVGSQQLKVNPGYSPSACNSEGVNSSKDFVSDDLVFSRTTQVKGFYSVKEKFASLCERNRVSLSVNDNLCSSSSVPLQRDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFTHAHGDATTSEKNTFAGWKVKTTPDYDLPDQSVGYQVQAEDQSHEVALRTKGRKETSALGLLASAYGNSSDSEEDQADPDIAVRDNDSDVMNRPSGSMSQNMSSLPSHFQDCNASAVRVHVDYEQKANSEGCDTAFKNTSCTLNYSQDGREAETSMLRNSGCPIDNRSASLLPHSDEDSSRLHVFCLEHAAEVEQQLHSIGGAQILLLCHPDYPKVEAEARNVAEELGIDGIWKDLDYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRNAPAGSTTEPKVYQRRSSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDEKILHGWSLPDKKIEREYVSLLENFSKKRKTTVESRKAWKTSFAEGEYVSDNSIEEKYNPQQRTYSRSKQAIYFDKDDAASEEDYSPLQQYRKPTIKQAKYSESDEVSDDSMDDNANMQHGRNFKFKEPKFIDSDIVSDDTMGYDSDSQLRRELSNKQIEDSERDGISEDSMGGSSLKRRRKTCKSKPAKYFARDVTSDDQMEDHFQKQPRRIPKSRQAKYLDAEDIMVSDDQVEHRIHKQQRSKGRRAKYLAGEEITSGDQLEDHSGKCHRRIRKSRQGKCLVVEDVMSDDQLEDHFQKPRGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKPVKSMSEEDINSDDQMEDSSHQQRRRVLRSQQSKLEAQQEMKQSNSCHVKEQTSRPLKRGAQLLVKPKTSQKMKQPPRVQKSHPNNFRDFNLCSEEEEEGGPSTRLRKRVPKVEESEAKPKEKVTQRKKVNNSTASKVSKTKDEEAEYECDIDGCTMSFSSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1689 1588 Gene3D Classic Zinc Finger 1446 1496 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1415 1453 - -
Lele22g1689 1588 ProSiteProfiles JmjN domain profile. 62 103 IPR003349 -
Lele22g1689 1588 Pfam JmjC domain, hydroxylase 266 384 IPR003347 -
Lele22g1689 1588 PANTHER LYSINE-SPECIFIC DEMETHYLASE 54 1522 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1127 1205 - -
Lele22g1689 1588 ProSiteProfiles Zinc finger C2H2 type domain profile. 1496 1525 IPR013087 -
Lele22g1689 1588 SUPERFAMILY beta-beta-alpha zinc fingers 1496 1532 IPR036236 -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1357 1376 - -
Lele22g1689 1588 Gene3D Cupin 55 406 - -
Lele22g1689 1588 SMART c2h2final6 1496 1520 IPR013087 -
Lele22g1689 1588 SMART c2h2final6 1526 1550 IPR013087 -
Lele22g1689 1588 SMART c2h2final6 1556 1582 IPR013087 -
Lele22g1689 1588 SMART c2h2final6 1473 1495 IPR013087 -
Lele22g1689 1588 ProSiteProfiles JmjC domain profile. 236 402 IPR003347 -
Lele22g1689 1588 FunFam Probable lysine-specific demethylase ELF6 1553 1582 - -
Lele22g1689 1588 ProSitePatterns Zinc finger C2H2 type domain signature. 1528 1550 IPR013087 -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1177 1205 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 699 744 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1277 1292 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1081 1109 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1134 1157 - -
Lele22g1689 1588 FunFam Probable lysine-specific demethylase ELF6 55 406 - -
Lele22g1689 1588 SUPERFAMILY beta-beta-alpha zinc fingers 1536 1580 IPR036236 -
Lele22g1689 1588 ProSiteProfiles Zinc finger C2H2 type domain profile. 1526 1555 IPR013087 -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 727 744 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1325 1356 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1274 1463 - -
Lele22g1689 1588 FunFam Probable lysine-specific demethylase ELF6 1523 1552 - -
Lele22g1689 1588 ProSiteProfiles Zinc finger C2H2 type domain profile. 1556 1587 IPR013087 -
Lele22g1689 1588 ProSitePatterns Zinc finger C2H2 type domain signature. 1498 1520 IPR013087 -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 1398 1414 - -
Lele22g1689 1588 Pfam jmjN domain 63 96 IPR003349 -
Lele22g1689 1588 SUPERFAMILY Clavaminate synthase-like 228 416 - -
Lele22g1689 1588 MobiDBLite consensus disorder prediction 118 139 - -
Lele22g1689 1588 ProSitePatterns Zinc finger C2H2 type domain signature. 1558 1582 IPR013087 -
Lele22g1689 1588 Gene3D Classic Zinc Finger 1497 1580 - -
Lele22g1689 1588 SMART JmjN_1 61 102 IPR003349 -
Lele22g1689 1588 SMART cupin_9 233 402 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1689 Lele-ChrLele22 22359180 22368639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1689 1131 1587 C2H2 Transcription Factor Family AT3G48430 37.143 8.39e-72 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele22g1689 JmjC 1.8e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1689 22 22359180 22368639 Lele22g1689 22 22359180 22368639 ECH
Lele22g1689 22 22359180 22368639 Lele23g0299 23 2049515 2057363 hybridization
Lele22g1689 22 22359180 22368639 Lele24g1655 24 22039201 22047168 hybridization