Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1688 ATGGAGTCTGCTGAACCCAAATCAACTGCAGCTTCGAATTCCAACGAAAACCCAGAATTGGGCTTTCGCTCGGCCTCATCTTGGCCTAGTTCTGATCACGCTTCGGAAACCTCAGATCTTAATCATCAGGCTGAGGTCGACGCACTTAATGGGGAGTTTAAGAACAAGTTGATTTTGAAGGATAAGGATGAAGAGGGAGAGACTGTGAACAAAGATTATAAATTTGATGCTAGTGAGGAAGTGTCTGGTAAACACGGTGCTGAGGAATCTTATGAGGTAGATGGGTGGGGTTGGAATGAAAATGAGGACAATAATTGGACTACGAATGTGAACGGGAATGAGAATGATGAGGATGGTGGAGATTATGATCTTGCTTTCCATGAAATGGAGATAAAGGAAGAGAGAAGCGGTGATAGCAACCACCAGTACCCAGTAAGGCCCGAAGCAGAAGATTGTGCATTCTATCTGAAGACTGGATCTTGCAAATTCGGATTCAATTGCAAGTTTAATCACCCTGTAAATAGGAGGAAAAATCAGGCCGGTAAAGAGAAGTCAGGAGAGAGAGAAGAATCAACTGATAGATTGGCGCAGGCAGAATGCAAGTATTATCTATCGTCAGGAGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCATTCAAAAGGAAAATGTTCAGTAGCCACAGTTCTAGAGCTTAATTTTCTTGGTCTGCCAATTCGTCTGGGGGAGAAAGAGTGCCCTTATTACATGCGTACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTTAATCATCCAGATCCTACAGCTGTCGGAGGAGGTGATCTTCCTGCAAGATATGGTAATGGTGGGTCAATATCATTACAAGGTGTCTCACAGCCATCTGTACCCTGGTCTTCTCCAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTAGTCAAGGCGTTTCTTCCCAAAGTTCTGAATGGGATGTGTATCAGCCACCTGTCTACCTACCTGAGGGGAGCATGCACCCACCGTCGGCATATGTTATGAACAACCCAGCGATTGAGAACAATATTTATATGCATCATCAAAAGAAGATGCAGGTTGAAGAATTTCCTGAAAGGCCCGGGGAGCCTGAATGCAGTTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCACCCAAGGAATCGGATTACAAAGTTACCCTCTTCTACATGCACCCTGAGTGACAAGGGTCTACCTTTGAGACCTGACCAGAATGTGTGCACGCATTACAGTCGCTATGGAATCTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACCCATCGCCCTCTACAGTGGCTCCACTTGATCAGCAATCGTCCTAA 1398 0.4371 MESAEPKSTAASNSNENPELGFRSASSWPSSDHASETSDLNHQAEVDALNGEFKNKLILKDKDEEGETVNKDYKFDASEEVSGKHGAEESYEVDGWGWNENEDNNWTTNVNGNENDEDGGDYDLAFHEMEIKEERSGDSNHQYPVRPEAEDCAFYLKTGSCKFGFNCKFNHPVNRRKNQAGKEKSGEREESTDRLAQAECKYYLSSGGCKFGKACKYNHSKGKCSVATVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGGDLPARYGNGGSISLQGVSQPSVPWSSPRTLNETAAFMPMMLSPSQGVSSQSSEWDVYQPPVYLPEGSMHPPSAYVMNNPAIENNIYMHHQKKMQVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPRNRITKLPSSTCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINPSPSTVAPLDQQSS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1688 465 SMART c3hfinal6 423 450 IPR000571 GO:0046872
Lele22g1688 465 SMART c3hfinal6 194 221 IPR000571 GO:0046872
Lele22g1688 465 SMART c3hfinal6 240 267 IPR000571 GO:0046872
Lele22g1688 465 SMART c3hfinal6 375 402 IPR000571 GO:0046872
Lele22g1688 465 SMART c3hfinal6 146 173 IPR000571 GO:0046872
Lele22g1688 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 198 221 IPR000571 GO:0046872
Lele22g1688 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 377 402 IPR000571 GO:0046872
Lele22g1688 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 426 449 IPR000571 GO:0046872
Lele22g1688 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 172 IPR000571 GO:0046872
Lele22g1688 465 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 243 266 IPR000571 GO:0046872
Lele22g1688 465 ProSiteProfiles Zinc finger C3H1-type profile. 240 268 IPR000571 GO:0046872
Lele22g1688 465 Gene3D - 183 270 - -
Lele22g1688 465 SUPERFAMILY CCCH zinc finger 145 175 IPR036855 GO:0046872
Lele22g1688 465 Gene3D - 333 410 - -
Lele22g1688 465 Gene3D - 123 182 - -
Lele22g1688 465 Gene3D - 423 463 - -
Lele22g1688 465 PANTHER PROTEIN PHOSPHATASE RELATED 12 457 - -
Lele22g1688 465 ProSiteProfiles Zinc finger C3H1-type profile. 375 403 IPR000571 GO:0046872
Lele22g1688 465 MobiDBLite consensus disorder prediction 54 90 - -
Lele22g1688 465 MobiDBLite consensus disorder prediction 1 44 - -
Lele22g1688 465 SUPERFAMILY CCCH zinc finger 421 449 IPR036855 GO:0046872
Lele22g1688 465 ProSiteProfiles Zinc finger C3H1-type profile. 146 174 IPR000571 GO:0046872
Lele22g1688 465 ProSiteProfiles Zinc finger C3H1-type profile. 194 222 IPR000571 GO:0046872
Lele22g1688 465 SUPERFAMILY CCCH zinc finger 241 267 IPR036855 GO:0046872
Lele22g1688 465 SUPERFAMILY CCCH zinc finger 198 223 IPR036855 GO:0046872
Lele22g1688 465 MobiDBLite consensus disorder prediction 1 90 - -
Lele22g1688 465 ProSiteProfiles Zinc finger C3H1-type profile. 423 451 IPR000571 GO:0046872
Lele22g1688 465 SUPERFAMILY CCCH zinc finger 380 405 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1688 Lele-ChrLele22 22353706 22356994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1688 371 465 C2H2 Transcription Factor Family AT3G02830 47.917 3.34e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele22g1688 zf-CCCH 1.8e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1711 21 25010505 25013734 Lele22g1688 22 22353706 22356994 ECH
Lele22g1688 22 22353706 22356994 Lele22g1688 22 22353706 22356994 ECH
Lele22g1688 22 22353706 22356994 Lele23g0300 23 2059678 2062928 hybridization
Lele22g1688 22 22353706 22356994 Lele24g1654 24 22033969 22037555 hybridization