Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1640 ATGAAAGCAGCGTCATGGGATTTGGGTGAATTTGATGAAACAACAGGCTTAGCCAGCATAGAAGAAACAATTGATGGGTCAAGCAGAAGATTTATTAGTGCTGATAGAAGTAATAAAGGGGGATTTTCTGTGGATTTGAAGCTTGGTACTCAAGTGGGGAATTCTAGTAGTAGTAATGAACCACAAGTTTCTAAGTGGAAAGATGTTGTTGGAGGAGTCTCTAAAGTGATGATGATGACATCTTCTTCTTCATTATCGTCTTCCTCAGGGTCATCTAAGAGAGCTCGAGCAATTAACAAGGCAAACCAGACAGTTTCATGCCTTGTAGATGGGTGCAATTCAGATCTTAGTGATTGTAGGGACTATCACAGGCGCCATAAGGTCTGCGAACTCCATTCTAAGACTCCAGTGGTCACAATTAATGGCAACAAGCAAAGGTTCTGTCAACAGTGTAGCAGGTTTCATTCTCTGGAGGAATTTGATGAAGGGAAGAGGAGTTGCAGGAAGCGTTTAGATGGGCACAACCGACGAAGGAGGAAGCCGCAGGGAGAAGGAGGAGGGGGAGGGAGGTCTGGAAGCATTTTGACAAATTACAAAGGCACCCACTTGTGGCCCTTCTCCAGCTCACATGTGTATCCTTCCGCTGCCATGGCTCACCCTCCTTGGAATTCATCAGACGTAAGGCTCCACCACAACCCTCACCATCAGCATCATCAACTCCATCACTTGGTTGATCATAAACAGGACCTCTTTCTGGGATCATCGTCGTCATCGCCATCATCATCATCATCCTATTCAGAAGCAAGTAATAATAACATCATTAATGCTAACAAACATCGGCAGCTAGCATTCTTGCAAGGTGACAACTTAACAACAATGGAGAACAACAATCAGCAAGATCTACCCCCACCACCTGCTTCTGTGTGCCAAACGTTTCTGAGAGCCGCGCCATTGCCAGCAGCTCCACCAATTCATGGCGGCGACCGCCATGATTCTCACTGTGCTCTCTCTCTCCTGTCATCCCCACAGACGCACACAAGTGGGAATGGTTTGAGCCAAATGCAGCCTCATCAACAAGCCATGTCGATTATGCGGCAGCACCAACCCTTAGGACTGAGCCTGCATGATCGTGGCCTTGAGTCGGTGGACCCGACGGTCTTGGTTCACCATGGCAGTGACCATTGTCCAACTTTGTATAACATGAATGAGGCCCGTCCTCCATTTCCTTTTCATTGGGAATAG 1242 0.471 MKAASWDLGEFDETTGLASIEETIDGSSRRFISADRSNKGGFSVDLKLGTQVGNSSSSNEPQVSKWKDVVGGVSKVMMMTSSSSLSSSSGSSKRARAINKANQTVSCLVDGCNSDLSDCRDYHRRHKVCELHSKTPVVTINGNKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQGEGGGGGRSGSILTNYKGTHLWPFSSSHVYPSAAMAHPPWNSSDVRLHHNPHHQHHQLHHLVDHKQDLFLGSSSSSPSSSSSYSEASNNNIINANKHRQLAFLQGDNLTTMENNNQQDLPPPPASVCQTFLRAAPLPAAPPIHGGDRHDSHCALSLLSSPQTHTSGNGLSQMQPHQQAMSIMRQHQPLGLSLHDRGLESVDPTVLVHHGSDHCPTLYNMNEARPPFPFHWE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1640 413 Pfam SBP domain 107 180 IPR004333 GO:0003677
Lele22g1640 413 Gene3D - 98 168 IPR036893 GO:0003677|GO:0005634
Lele22g1640 413 SUPERFAMILY SBT domain 105 183 IPR036893 GO:0003677|GO:0005634
Lele22g1640 413 FunFam Squamosa promoter-binding-like protein 14 98 168 - -
Lele22g1640 413 MobiDBLite consensus disorder prediction 171 194 - -
Lele22g1640 413 ProSiteProfiles Zinc finger SBP-type profile. 104 181 IPR004333 GO:0003677
Lele22g1640 413 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 363 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1640 Lele-ChrLele22 21974874 21977859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1640 1 229 SBP-box Gene Family AT5G50670 48.333 2.31e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele22g1640 SBP 6.9e-31 No_clan