Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1632 ATGCATTTATCCCAGCACCCACTTGTCAGCTTGCCCACCATTTCATTAACCATCGCTCTTTCCTTTTCTTGCTGCATTGCAGAACAAAGTCAATGTAACAAATACACCACATTACTTCTCAATCAAGCAAGGATAAATCTTCTTCCTTATACAGAAAGATTATGGAGAACCGATCCAAGAGCTGAATTATCCATGAGGATGGTAGGTTGGAGTTCTCGCAATCAAATTTCCCACCAATCTTCACGAATGACAAAACCCCAAGAGTTGCGCGGTCAAAGGAGGCTAAACCCTATGCTCTATGGAGACATGGAGAATCCTGACCCAAACCCAAGAGGCCCACTAAGAGAAGCATTAATGGAAAAGATGAATTTTGTTAGAAATGGAGTTAGCAGATTGCCTCCTGGTTTTCGGTTCCAGCCAACAGACCAAGAGCTCGTTTTTCAGTACTTGAAATGCAAGATCTTCTCTCTTCCCTTGCCTGCTACCATTATCCCTGACCTCAATCTCTGCAACTTCGATCCTTGGGATTTGCCAGGTAACTCTGATGAGGAAGAGAGATTGAAGATGATCGACTTTGCTCGTGTCCAGAAGGAGCTCGTCGAATGTGGCAAGGATGTTGAGCGCTCCGGTATCAAGGTTAACGTCAAAGGCGACAATCTTGCCCGCTTGATTGGAACCATTCCTGGCCCTCTTGGAACTCCTTATGAAGGGGGCATTTTCCAAATTGACATTACCATACCCGATGGCTACCCCTTCGAACCTCCCAAAATGCAATTTGCCACAAAAGTCTGCCCTGCACTGACCCTGAAAACAGCCCTGCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAACCTGATGATCCTCAAGATGCTGTTGTAGCAGAACAGTATCTCAAAGACTACCAGACATTTGTTGGCACCTCTCGGTACTGGACTGAAGCTTTTGCCAAGCCATCATCCCTTGGGATTGAGGATAAGGTAAAGAAGCTGGCAGAGATGGGATTCCCTGAAGCTCAGGCGAGGGGTGCTTTGGAGGCTGTTGGTGGCGATGAAAACTTGGCTCTTGAAAGGCTTTGCTCTTAA 1083 0.4645 MHLSQHPLVSLPTISLTIALSFSCCIAEQSQCNKYTTLLLNQARINLLPYTERLWRTDPRAELSMRMVGWSSRNQISHQSSRMTKPQELRGQRRLNPMLYGDMENPDPNPRGPLREALMEKMNFVRNGVSRLPPGFRFQPTDQELVFQYLKCKIFSLPLPATIIPDLNLCNFDPWDLPGNSDEEERLKMIDFARVQKELVECGKDVERSGIKVNVKGDNLARLIGTIPGPLGTPYEGGIFQIDITIPDGYPFEPPKMQFATKVCPALTLKTALLSVQALLSAPQPDDPQDAVVAEQYLKDYQTFVGTSRYWTEAFAKPSSLGIEDKVKKLAEMGFPEAQARGALEAVGGDENLALERLCS 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1632 360 Pfam UBA/TS-N domain 324 358 IPR015940 -
Lele22g1632 360 ProSiteProfiles NAC domain profile. 132 299 IPR003441 GO:0003677|GO:0006355
Lele22g1632 360 CDD UBCc 194 312 IPR000608 -
Lele22g1632 360 Pfam Ubiquitin-conjugating enzyme 194 263 IPR000608 -
Lele22g1632 360 SUPERFAMILY UBC-like 192 317 IPR016135 -
Lele22g1632 360 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 190 351 IPR000608 -
Lele22g1632 360 SMART ubc_7 193 317 - -
Lele22g1632 360 Gene3D - 317 360 - -
Lele22g1632 360 SUPERFAMILY NAC domain 123 181 IPR036093 GO:0003677|GO:0006355
Lele22g1632 360 SUPERFAMILY UBA-like 323 360 IPR009060 GO:0005515
Lele22g1632 360 Pfam No apical meristem (NAM) protein 133 185 IPR003441 GO:0003677|GO:0006355
Lele22g1632 360 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 322 360 IPR015940 -
Lele22g1632 360 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 222 304 - -
Lele22g1632 360 SMART uba_6 323 360 IPR015940 -
Lele22g1632 360 Gene3D Ubiquitin Conjugating Enzyme 264 316 IPR016135 -
Lele22g1632 360 CDD UBA_II_E2_UBC27_like 324 359 IPR041974 -
Lele22g1632 360 Gene3D Ubiquitin Conjugating Enzyme 180 263 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1632 Lele-ChrLele22 21869485 21883143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1632 119 184 NAC Transcription Factor Family AT5G13180 63.636 1.14e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lele22g1632 UQ_con 1.1e-14 CL0208