Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1620 ATGATTTCTGGAGTAAGCGGCGTCGCTTGGATGGACGAAAACAGAGAAGGAGACGACCCTACTGCTCCTTCTTCATGGGCTAACGTGAACGCCAACATCAGCATCGACAAAAACCAAAACCAGAGCCATTCTGGTTTTGTCCAGAACAAGGACGAGATGGGTTCTCTGTGTGCTTTCAAACCCATGCTTGAAATCGATGACGACGATTGGTACATCGCGAACAATGGTATCCAAAATCAATCAGATATTATCAGAGACATCACTTTCTCTCCCAACTTTGCTGACCAAGATGGTTTATTGCTGAACCCAGTGGATTCGTCCAATTCGTGTTCCCCATCTACCACCGTCTTCAACAATCTCGACCCATCTCAGGTTCCGTACTTTCTTCCTCCGAAACCCCCCTTATCGTCTCTTCTTAATGCCGTCCATAGTAACAATCCTTTAGAACATGGTTTTGATGTGGGTTGCGATGTCGGGTTTCTTGAGCTTCAAGCTTCCGGCTCCAGCCTTCTGCGAGGCTTCGCCGATTTCAGCTCACATAACAACCAGATAAGCCTTCCTAATTTATGCTCAGCCCCACAAGTCCCAACGTCAGGTATACCGCAGGTAACCGAAAGCAGTTTTTCGGGTTTCCGGGGTTTCGAGGAAGGTCCTGGAAAACCGCTATTCCTAAATAGACCGATCTTGAGACCCCTCGATTCATTACCTCTATCGGGAGCTCAGCCCACTCTTTTTCAGAAGAGAGTGGCTTTCCGAAAGAAGCTGGCCAGTAACGAGACTGAGAGAGACGGAGGAAAGGGTGAAATCGGAGAGGGGATCGAGAAGAAGAGGAAGATGGGTAGTTGGGAAGAAGTGGAAGACGCTAGCTTTGATGGGTCGGGGTTGAACTACGATTCCGAAGAGTTGACTGAGAATACGAGGGCGGAAGAGAACGGCAAGAACGGGGGAAACAGCTTCAATGTGAACAGTGCGGTGACTGGTGGTGGTGACGGTGGCGATAAGAAGGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTCGGAAGAAGCTCAATGATAGACTCTATATGTTGAGATCCGTTGTTCCAAAGATTAGCAAGATGGACAGGGCTTCAATTCTTGGAGATGCAATTGAGTACCTTAAAGAACTTATACAAAAGATCAATAACCTCAATGTTGAATTGGAGTCAAATCCTTCTGGTTCTTCACTGAGTACTCCGGCCCCCAGCTTTCATCCTCTGACACCGACTCCGCCAACGTTGCCCAGCCGTATAAAGGATGAACTTTGCCCCAGCTCATTGCCGAGCCCTAATGGCCAACCTGCAAGGATTGAGGTTAGGATGCGCGAAGGAAAAGCTGTGAATATCCACATGTTTTGTGGTCGCAAGCCGGGACTCTTGCTTACAACCATGAAGGCTTTGGACAACCTCGGATTAGAGATCCATCAAGCTGTTATTAGCTGTTTTAATGGATTTGCCATGGATGTCTTTCGAGCTGAGCAATGGAAGGAAGGTCAAGATGTTGTTCTTCCAGAGCAAATCAAAGCAGTATTGTTGGAGTCAGCTGGCTACCATGTCGCGAACTAG 1602 0.48 MISGVSGVAWMDENREGDDPTAPSSWANVNANISIDKNQNQSHSGFVQNKDEMGSLCAFKPMLEIDDDDWYIANNGIQNQSDIIRDITFSPNFADQDGLLLNPVDSSNSCSPSTTVFNNLDPSQVPYFLPPKPPLSSLLNAVHSNNPLEHGFDVGCDVGFLELQASGSSLLRGFADFSSHNNQISLPNLCSAPQVPTSGIPQVTESSFSGFRGFEEGPGKPLFLNRPILRPLDSLPLSGAQPTLFQKRVAFRKKLASNETERDGGKGEIGEGIEKKRKMGSWEEVEDASFDGSGLNYDSEELTENTRAEENGKNGGNSFNVNSAVTGGGDGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELIQKINNLNVELESNPSGSSLSTPAPSFHPLTPTPPTLPSRIKDELCPSSLPSPNGQPARIEVRMREGKAVNIHMFCGRKPGLLLTTMKALDNLGLEIHQAVISCFNGFAMDVFRAEQWKEGQDVVLPEQIKAVLLESAGYHVAN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1620 533 MobiDBLite consensus disorder prediction 331 353 - -
Lele22g1620 533 MobiDBLite consensus disorder prediction 309 325 - -
Lele22g1620 533 MobiDBLite consensus disorder prediction 402 428 - -
Lele22g1620 533 MobiDBLite consensus disorder prediction 256 353 - -
Lele22g1620 533 Gene3D - 334 404 IPR036638 GO:0046983
Lele22g1620 533 SMART finulus 346 395 IPR011598 GO:0046983
Lele22g1620 533 MobiDBLite consensus disorder prediction 256 285 - -
Lele22g1620 533 Pfam Helix-loop-helix DNA-binding domain 347 389 IPR011598 GO:0046983
Lele22g1620 533 CDD ACT_UUR-ACR-like 461 526 - -
Lele22g1620 533 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 207 529 - -
Lele22g1620 533 CDD bHLH_AtAMS_like 343 413 - -
Lele22g1620 533 FunFam BHLH transcription factor 336 404 - -
Lele22g1620 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 389 IPR011598 GO:0046983
Lele22g1620 533 Coils Coil 383 403 - -
Lele22g1620 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 409 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1620 Lele-ChrLele22 21740820 21745513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1620 59 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 47.942 6.84e-113 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele22g1620 HLH 2.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1620 22 21740820 21745513 Lele23g0374 23 2664355 2668931 hybridization
Lele22g1620 22 21740820 21745513 Lele24g1580 24 21483946 21484352 hybridization