Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1616 ATGTCTCACTTCACCCAACAAATAAAGAAGGCGTGTGGATCAACACGAAGCGTATTGATTATTCACCATCTTTTATTCTGGACAATGCAAATTGATAATCTTGATGATTCGCCCTTGTTCCGCCAACAGATCCAAAACTTGGAAGAAGGTGCTGACTTATTAAGATCCAGATGCTGGAAGTTCTACAAAGGATGTCGAAAGTACACGGAGGGACTTGAAGGGGAATATGATGGGGACAACGCGTTTGCAAATGCCCTTGAAACATTTGGAGGAGGACCTAGTGATCCTCTTTTTGATGTTGTGGGAGGATCTGTAATGACGAAATTCACAGTTGCTTTGAGAGAAATCAGCACATACAAGGAGCTGCTTCGGTCACAGGTGGAGCACATGCTGAATGACCGATTACTACAAGTTCTCAATGTTGACATCCTTGATGCCAAGGAAGCTCGAAAACGTTTTGATAAAGCCTCCGTTCAGTATGAACAGGCACGTGATAAATTTACGTCTTTGAGGAAAAGCGCCAAGTTGGATACCGTCGCTGCCGTAGAAGAGGAAATGCACAATGCAAGGGACTCATTTGAGGAAGCCCGTTTCAACCTGGTTAGTGCTCTCAACCATATTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTTCCTGGAATTATGGATGCTCATCTTCGATATTTTCAACAGGGATATCAACTATTCCAGCAGATGGAACCTTTCATCAGCGAGGAACACTTCTATATATTTAATTCTGCTAGGTTGCAGGTTCTGACTATTGCACAAAAGTCGAGAGAAAATTACAATACGGAGCAGATTTCCCTTCTTGAAAGAATTCAAGTGTACAAAAAACAAATTCATCAAGATAGTAAGCTCAACTCGAATAGCCCTTCTCCTAATAGAGACATGCAAGCTTTTGCTAGGATACCTAATGATGTGGCCGATGCTGTAATGCAATCTGCTGCAAATGGAAAGGTTCAAATTCTTAGACAAGGATATCTGTCAAAGCGATCTTCCAATCTGAGAGGGGCATGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGTTATACTACCATCGCAAACCGGGGAACTGGTTGCAAGCGCACGGAAGCGGCCAACAATCTGCAGCAAAGAATAATCCCACTGAACCTGGTACTGGGCTTTTGAGCCGTCTTGCTTATCACCATGCTGTTGTCGATGAAAAAACTGCAGCACGTCGTGCAGTGAACTTGCTAACATCAACAATCAAGATTGATGCTGAGCAAACGGATTTAAGATTTTGCTTCAGAATTATTTCCCCAACAAAGAACTTCACACTGCAAGCAGAAAATACGCTGGACCAAATGGATTGGGTTGAAAAGATAACAGGAGTAATTGCCTCCTTGTTGAATGCCCAAACAATAGAAATGCCTCCCTCAGTTGACTCTGAATGCAATGATGGTAACCCAGCCAGTAAGACTAATACGTCGGAAAATCCTCCAGTTGATGATCAGGTTGTAAAAAGTGAAAAGCCAATTGAAGTTCTTAGAAAGGTGTGCGGGAATAACAAGTGCGCTGATTGTGGTAAACCTGATCCGGACTGGGCATCCTTAAACCTCGGTATTCTTATATGCATAGAATGTTCTGGTGTGCATCGTAATCTTGGTGTACATATATCTAAAGTAAGATCGCTGACACTGGATGTGAAAGTCTGGGACGCTTCTGTTTTGGGCATGTTTCAGTCACTGGGTAATCTCTTTGCAAACTCAATTTGGGAAGAGCTGTTGCATTCACCAAATAATTCGCAATCAGATGATATGCCTGTATCTTCATTTAAGGCCAAAACTAAATTATTTCATGCAAAGAAACCAGAACATGATGACCCTATTTCATTGAAGGAGAGGTTCATTCACGCAAAGTATTTGGAGAAGGTCTTTGTTAACCGGAAGAAGAAGAAAACCGAAAGTATCCGAGCCCTGGCTCACCAGGTGTGGGAATGCATCTGTGCCAACGACAAGAGAGGAGTGTACCGACATATAGTCAAGTCAGATGTGGATCTCAATACCATCTCTGAGCAAGTATCATATGGTGTGTCTGCTTCTTGTCTCTCAACTCCATTAGCAGGTAATTCTGAGGTGCCGTCTTCAAGTAATATAGACTACTCATGCAAAAAAAATATAGACTCGTCAACAAAAAAAGAAAATCAGCCGACAGAGTTGCGACCCAAAAAAACAGAAAATGAGCTGGTAGAGGATAGACAAGATTGTTCTAGTTCGAGTGTGCTTCATCAGGCATGTCTAACTGCCGATTCAAGCATGGTGGAGCTCCTTCTCCAGTATGGTGCGGATATAAATGCTCCAGATTCAAGAGGTCAGACACCACTGCATTGTTGTATAATCAATGGCAAGAGCACAGCTGCAAAACTGCTTGTAATAAGAGGGGCCAATTCTCACGCTGCAGATAAAGAAGGCAATACCCCTATTGAGCTTGCTTCGAGATCCGATTCTATTGGAAGCGATGTTTACTCTCTCTTATCAAGCAGATAG 2538 0.4251 MSHFTQQIKKACGSTRSVLIIHHLLFWTMQIDNLDDSPLFRQQIQNLEEGADLLRSRCWKFYKGCRKYTEGLEGEYDGDNAFANALETFGGGPSDPLFDVVGGSVMTKFTVALREISTYKELLRSQVEHMLNDRLLQVLNVDILDAKEARKRFDKASVQYEQARDKFTSLRKSAKLDTVAAVEEEMHNARDSFEEARFNLVSALNHIEAKKRFEFLEAVPGIMDAHLRYFQQGYQLFQQMEPFISEEHFYIFNSARLQVLTIAQKSRENYNTEQISLLERIQVYKKQIHQDSKLNSNSPSPNRDMQAFARIPNDVADAVMQSAANGKVQILRQGYLSKRSSNLRGAWKRRYFVLDSRGMLYYHRKPGNWLQAHGSGQQSAAKNNPTEPGTGLLSRLAYHHAVVDEKTAARRAVNLLTSTIKIDAEQTDLRFCFRIISPTKNFTLQAENTLDQMDWVEKITGVIASLLNAQTIEMPPSVDSECNDGNPASKTNTSENPPVDDQVVKSEKPIEVLRKVCGNNKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKVRSLTLDVKVWDASVLGMFQSLGNLFANSIWEELLHSPNNSQSDDMPVSSFKAKTKLFHAKKPEHDDPISLKERFIHAKYLEKVFVNRKKKKTESIRALAHQVWECICANDKRGVYRHIVKSDVDLNTISEQVSYGVSASCLSTPLAGNSEVPSSSNIDYSCKKNIDSSTKKENQPTELRPKKTENELVEDRQDCSSSSVLHQACLTADSSMVELLLQYGADINAPDSRGQTPLHCCIINGKSTAAKLLVIRGANSHAADKEGNTPIELASRSDSIGSDVYSLLSSR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1616 845 SUPERFAMILY BAR/IMD domain-like 32 352 IPR027267 -
Lele22g1616 845 ProSiteProfiles PH domain profile. 329 464 IPR001849 -
Lele22g1616 845 Coils Coil 146 166 - -
Lele22g1616 845 MobiDBLite consensus disorder prediction 725 749 - -
Lele22g1616 845 Pfam BAR domain of APPL family 32 246 - -
Lele22g1616 845 SMART ANK_2a 787 816 IPR002110 GO:0005515
Lele22g1616 845 SMART ANK_2a 754 783 IPR002110 GO:0005515
Lele22g1616 845 Gene3D - 322 476 IPR011993 -
Lele22g1616 845 MobiDBLite consensus disorder prediction 475 500 - -
Lele22g1616 845 ProSiteProfiles Ankyrin repeat region circular profile. 787 819 - -
Lele22g1616 845 SMART 5bar 7 246 IPR004148 GO:0005515|GO:0005737
Lele22g1616 845 Gene3D Arfaptin homology (AH) domain/BAR domain 31 290 IPR027267 -
Lele22g1616 845 SUPERFAMILY PH domain-like 330 481 - -
Lele22g1616 845 Pfam Putative GTPase activating protein for Arf 509 646 IPR001164 GO:0005096
Lele22g1616 845 SUPERFAMILY ArfGap/RecO-like zinc finger 507 646 IPR037278 -
Lele22g1616 845 ProSiteProfiles ARF GTPase-activating proteins domain profile. 507 651 IPR001164 GO:0005096
Lele22g1616 845 Coils Coil 179 199 - -
Lele22g1616 845 SMART arf_gap_3 507 651 IPR001164 GO:0005096
Lele22g1616 845 CDD BAR_SFC_plant 43 243 IPR035670 -
Lele22g1616 845 PANTHER CENTAURIN/ARF 32 843 IPR045258 GO:0005096
Lele22g1616 845 MobiDBLite consensus disorder prediction 475 501 - -
Lele22g1616 845 SMART PH_update 330 466 IPR001849 -
Lele22g1616 845 ProSiteProfiles Ankyrin repeat region circular profile. 754 785 - -
Lele22g1616 845 CDD ArfGap 510 638 - -
Lele22g1616 845 Pfam Ankyrin repeats (3 copies) 759 840 IPR002110 GO:0005515
Lele22g1616 845 CDD PH_ACAP 332 468 - -
Lele22g1616 845 ProSiteProfiles Ankyrin repeat profile. 754 786 IPR002110 GO:0005515
Lele22g1616 845 ProSiteProfiles Ankyrin repeat profile. 787 819 IPR002110 GO:0005515
Lele22g1616 845 Pfam PH domain 331 463 IPR001849 -
Lele22g1616 845 PRINTS HIV Rev interacting protein signature 561 582 IPR001164 GO:0005096
Lele22g1616 845 PRINTS HIV Rev interacting protein signature 519 538 IPR001164 GO:0005096
Lele22g1616 845 PRINTS HIV Rev interacting protein signature 538 555 IPR001164 GO:0005096
Lele22g1616 845 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 489 653 - -
Lele22g1616 845 SUPERFAMILY Ankyrin repeat 750 834 IPR036770 -
Lele22g1616 845 Gene3D Arf GTPase activating protein 488 653 IPR038508 -
Lele22g1616 845 Gene3D - 723 836 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1616 Lele-ChrLele22 21680501 21692770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1616 519 656 C2H2 Transcription Factor Family AT4G21160 41.007 1.58e-20 92.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1616 22 21680501 21692770 Lele23g0378 23 2712796 2722652 hybridization
Lele22g1616 22 21680501 21692770 Lele24g1577 24 21434165 21445703 hybridization