LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele22g1614	ATGCCTTTTGAAATAATGGATCAGAGGGCTGTCTCTGCCTCATCACACTTCTTTGATGACATTTCGTTTTTCTCCGAGAAGAATGCCGGATTGGAGAGGCCAAGATCTATTCATGACCACTACCATCAAGGAAAGAATGGAACGGTAGCATCACCTGGCAGCATTTTGAATACTCCTCGGGAAATTAGTGCAAAGACTGGCTGGTCAAAGTCATCGACAGGTCTGTCTGGAGCAACCATTGGAAAGCTGCATGTTGGTGAAGAAGGCAATGTTGATATGTTTAAAGCCTCCAAGGAACCATTAAATTATCATCCCAGATCTCAGTCTAATGTGCGTATGCAGCCAGCATCTAACCCATATGGTTTAATTGGCAATAAGATCATCCCCAATGCTGCCTCATGTGAAAGTAGTTTATTCTCAAGCTCACTATCCGAGATATTTACCCGAAAGCTGAGGTTAGCGAAAAATGATATTCTGCCTCAACAGCCTGTTACTGTTGGTTCCCTTCCTGACAAGGAACCATACAAATCTCTTGAAGAAATCGAGGCTGACACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCATTGATGACTTAGGATCCAATACTTTTGCCAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGCGGAGGCATGGAGCTAGAGGATGATGAACATCTAACTTCAGGAAAAATGACCAGCAGTCCAGATGGAGATCTTGGTTGCTTTGGAGGCTTCAAAGGGAAACTTTCTTTTGGTGAAAACCCTTCTAGAACACTATTTGTTAGAAACATCAACAGCAATGTCGAAGATTCTGAGCTGAAGGCTCTCTTTGAGCAATATGGTGATGTCCGAACCACTTATACTGATTGCAAGCATCGGGGATTTGTTATGATTTCTTATTATGATATAAGAGCTGCACAAAATGCAATGAAAGCTCTTCAAAACAGATCATTGAGGTCTAGGAAGCTTGACATACATTATTCAATACCAAAGGTAAATGCTCCAGTGAAGGATATTAGCCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTGTTTCACATGATGAAATTCTACAAATTTTTGGATTTTATGGAGAAATCAAAGAAATTTATGAATCTCCTGAAATGAATTATGACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAACAAGAGTGAAATTGCTGGGAAGCTGATCAATCTTGAACCCAGCCATCCTAGGGGTTCAAGTGCAACGTGTTTGATGCAGCAATCTCAGAAGGGGCAGAATGAGTCTGATCTTAGTCAGAGTATGGGTGACAACTTATCATTAAGCCAGAATGCAATAACGTCTTCTGGAGTAAGTGCAGCTGGCTGCTTGGACAATGGATCTGACCATGGATTTCCAGCAGCAATACGACAAACTGTGGATGCCTTATCCATGAATGTATTGTCACATGTGAATTCTGGCATTCACAACACAGTGAGAGGGCCATCAATTCCTGGATTCCATCCCCATTCCCTCCCTGAGTATCATGATGGTTTAGCTTGTGGCAGTCCTTACAACTTTTCAAGAACCTTTAGCAATGTATCTGGTAATATGGGTCCAGGAGTGACAGATAGCTCTGACAGCAGGCGCACTCTGGGATTTGGTTCAACCGGGAAATTGACAGACTTTAACGGAGGAGGAAATGGGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCCAATTTGCACCAGCAAACTCCACCAGGTCCAATGGTCTGGCAGAAAAAACTGTCATTTGTTAATGGTGCTTGTGCTCCTTGTCTTCCACAGATGCCTGGCTTTCCCAGATCATCATCTCATATGCTGAGAGCATCACATATATACCACCAAGTAGGATCAGCACCAGTTGCTACAGCCTCCCCATGGGACAGACAACATTCTTATTTGGCAGAGTCCCCTGACTCCTCTGGTTTTCACATGAGTTCTCTTGGTAGTACAGGTTTTCCCGGTACATGGCAATTGCATCCTCCAGAATTTTCTTCTCAAAAAATGTTTCCTCATGTTGGTGGGAATGGCATGGATTTGTCTCCCAATGCTGGGCACAGCTCCCTAAATCAGTTTTCACATGTTTTCCCTGGGAGACATCCCATGACTTCAATGTCTAAATTTGATTCAACCAATGACAGAATGAGAAACCCCTATCACCGTAGAAGTGATGCTAACACTAACAGTGCTGACAAAAAGCAATTTGAACTTGACCTAAGTCGCATATTGAACGGCGAAGACACACGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTCTTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGTCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCACTTGCCTATGCTAGAATTCAGGGAAAAACTGCTCTTATTGCACATTTCCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCATACAGAGGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCTATGGGTACCAATATTAGATTGAGGCTTGGAAAAACAGGTGCTAGGAGCCCATCGGATTCGACTGGTGGAGAGGAGTCTTCTAATGGAATAATAAGTTCTTCAATTGGCTCTTCAAGAAACTCAGACTGA	2832	0.4237	MPFEIMDQRAVSASSHFFDDISFFSEKNAGLERPRSIHDHYHQGKNGTVASPGSILNTPREISAKTGWSKSSTGLSGATIGKLHVGEEGNVDMFKASKEPLNYHPRSQSNVRMQPASNPYGLIGNKIIPNAASCESSLFSSSLSEIFTRKLRLAKNDILPQQPVTVGSLPDKEPYKSLEEIEADTIGNLLPDEDDLFSGVIDDLGSNTFAKTGDDLEDFDLFSSGGGMELEDDEHLTSGKMTSSPDGDLGCFGGFKGKLSFGENPSRTLFVRNINSNVEDSELKALFEQYGDVRTTYTDCKHRGFVMISYYDIRAAQNAMKALQNRSLRSRKLDIHYSIPKVNAPVKDISHGTLLLSGLDSSVSHDEILQIFGFYGEIKEIYESPEMNYDKFIEFYDVRAAEAALRALNKSEIAGKLINLEPSHPRGSSATCLMQQSQKGQNESDLSQSMGDNLSLSQNAITSSGVSAAGCLDNGSDHGFPAAIRQTVDALSMNVLSHVNSGIHNTVRGPSIPGFHPHSLPEYHDGLACGSPYNFSRTFSNVSGNMGPGVTDSSDSRRTLGFGSTGKLTDFNGGGNGSLPNHGLYHMWSGSNLHQQTPPGPMVWQKKLSFVNGACAPCLPQMPGFPRSSSHMLRASHIYHQVGSAPVATASPWDRQHSYLAESPDSSGFHMSSLGSTGFPGTWQLHPPEFSSQKMFPHVGGNGMDLSPNAGHSSLNQFSHVFPGRHPMTSMSKFDSTNDRMRNPYHRRSDANTNSADKKQFELDLSRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKSFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRLRLGKTGARSPSDSTGGEESSNGIISSSIGSSRNSD	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele22g1614	943	MobiDBLite	consensus disorder prediction	426	452	-	-
	Lele22g1614	943	CDD	RRM3_MEI2_like	778	863	IPR034454	-
	Lele22g1614	943	SUPERFAMILY	RNA-binding domain, RBD	777	861	IPR035979	GO:0003676
	Lele22g1614	943	Pfam	RNA recognition motif 2	775	871	IPR007201	-
	Lele22g1614	943	MobiDBLite	consensus disorder prediction	889	943	-	-
	Lele22g1614	943	MobiDBLite	consensus disorder prediction	915	943	-	-
	Lele22g1614	943	SUPERFAMILY	RNA-binding domain, RBD	264	426	IPR035979	GO:0003676
	Lele22g1614	943	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	355	418	IPR000504	GO:0003723
	Lele22g1614	943	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	269	333	IPR000504	GO:0003723
	Lele22g1614	943	FunFam	Protein MEI2-like 1	351	447	-	-
	Lele22g1614	943	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	352	425	IPR000504	GO:0003723
	Lele22g1614	943	CDD	RRM1_MEI2_like	266	341	IPR034453	-
	Lele22g1614	943	Gene3D	-	349	450	IPR012677	-
	Lele22g1614	943	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	267	340	IPR000504	GO:0003723
	Lele22g1614	943	Gene3D	-	255	348	IPR012677	-
	Lele22g1614	943	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	116	906	-	-
	Lele22g1614	943	SMART	rrm1_1	777	853	IPR000504	GO:0003723
	Lele22g1614	943	SMART	rrm1_1	353	421	IPR000504	GO:0003723
	Lele22g1614	943	SMART	rrm1_1	268	336	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele22g1614	Lele-ChrLele22	21655241	21661008	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele22g1614	269	446	Eukaryotic Initiation Factors Gene Family	AT2G36660	19.355	4.15e-06	48.9

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele22g1614	22	21655241	21661008	Lele23g0379	23	2737531	2743530	hybridization
	Lele22g1614	22	21655241	21661008	Lele24g1575	24	21410490	21416273	hybridization