Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1611 ATGGCCATCGGCGGCACAACCGGGTCTCTCCTCAATCCTGCTGATTCTCCAAACGATGCTGTTGATAACTTCCTAAAGGATCGTGGCTATCATGGCCTCTACTCTCAGATCGAGGTTCTTTTTCTGTTTTGGAACAAGTTTCTCTGGACATTTCGCTCTCTTCCTGAGTTAGAATTTCAATTCGTTACTAGTTTTTATGGAAGGACTTTTTCTAAGCATACCAGTGGCTTCTTTTGTGCTGCAGTTATCTTTTTCTGCTTCAGGTTTCGTATATATGATATTGACACCCAGTTCCACAATGTAGACGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTTGGTGAAGCAACCTGTGCGTTATCTGAGGATCCCTTTTTAATGATATCAAAAGTTGTGGAAGGCAGCACCCAAATTCCTATATGCAAAACAGAAGTTAAGAAAAATGACCACAACCCTATATGGAAGCCAGTATTCTTGAATATTCAACAAGTACGAAGCAAGCGTCGACTTGGAGTCAGTGCATATTGTTTTGTCAGTGATATTGGTTTTTTTACATGTTGTATTGTTAACAATTCAGCGAGGAAAGTGCGTAAATCCTTGATAGAGTTGGAAAAGCTTCATTCTGGTGGTCAAGGAGAAAGTTTATTTTTACCCACTGCTGATGGAAAAGATAATCATGATGAGGTCTTAAAGATCCAAATATATGTGGACAAGTATACTGAAAGTGTCCAACATACTTTTCTCGATTACTTGGCTGGGGGATTTGAATTGAACTTTATGGTGGCCATTGATTTCACAGCTTCAAATGGAAACCCACGCCTTCCTGATTCTTTACATTATATGGATCCTTCAGGGCGGCCTAATGCATACCAGAGAGCTATCTTAGAGGTTGGGGAGGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACATGGGGCTTTGGCGCTCGACCAATTGATGGTCCTGTCTCCCATTGTTTCAATTTGAATGGAAGCAATCATTACTGCGAGGTGGATGGGATCCAAGGAATTATGATGGCATATACAAGTGCCCTGCTTAATGTTTCTCTTGCAGGGCCAACTCTGTTTGGGCCTATAATAAACAATGCTGCACTCATTGCCAGTGAATCTGTAGCAAATGGAAAACGAAAGTACTTTGTTTTATTGATAATCACAGATGGAGTGGTAACAGATCTCCAAGAAACAAAAGATGCTCTTATTAAAGCATCTGATCTGCCATTATCGCTCCTTATTGTTGGAGTAGGTGCTGACTTCAAAGACATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTTGAAAGTTTTCCGGGTCGGTTTGCTTCACGGGATATAGTCCAGTTTGTTCTATTTCGGGATGTTCAAAGTAGATGGACAGTTAACCTGATTTCCTTAGCTGATCATGAGGATATCCCCAACTCTGCAGTGTTAGGGGCAGTTGGTTCCTATGTCACATTCTGTTTCCTCATGGTCTCTCTTAAGGCACTTCTCTTAAAGGAGATCGATCCCTTGACACCTCAAGACTACGCTAGAAGGAATAAGAATAGAGGTAAAGTGGATCGAAATCATGGAAAGAGATCAGGTTCTTCCGAAGAAGCGAAAGAGAAAGAAGAAGAAGAGGAAGAGTTAATGTTCCCAATCTACTCCGATCGTTCTCAGCAAGATATGTCCGCCATGGTTTCTGCTCTTGCTCAGGTGATTGGGGCTTCTCCTAATGTTTATGATCAGAACCGTTTAACTGATCATATGTCTCAGTCCACTTCTGAAACTAACTCTCAGCAATGGAGCACAAGGAAGAGACACTATAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCGGCTGAGATTCGTGATCCCAAGAAAGCCGCCAGAGTTTGGCTCGGAACCTTCGACACGGCGGAGGCGGCCGCCCTTGCTTACGACAAAGCCGCTCTCAAATTCAAAGGAAGCAAAGCTAAGCTCAACTTCCCTGAAAGAGTTCAACTTCAGCCCCCACCTTCCATGACGACGACCACGACGTCGTTTCCTTCTTCTTCAGGTGAGTTTTCTTTCCTCACAAACCCTCCTCATAATCCACAACCGCCACTTGTTCTTGCTCCTCCGACGATACCGTTCTTTTCACAACAACCTTATCATTATAATTACCAATATAATCCACATCTTCTGGGAAGTGTTGGTGGCGGCGGTCACAATTTGTTTAATTATTCTACTCAACAACAACTACAACCTTATACGTCTGGGTCTTCGTCCTCGTCTTCCTCGTATGGAATGTCTCGCCAGCAACATGAACAAGAACGAGAACAACTTCTACAGTTTCCCATAATGCAATTTGGAGCTCCCTCTTCTTCTACTTCTCATCCTCCTTCAACTTGGCCTTATCATGAGTTTGATGGTCAACGTTGA 2430 0.43 MAIGGTTGSLLNPADSPNDAVDNFLKDRGYHGLYSQIEVLFLFWNKFLWTFRSLPELEFQFVTSFYGRTFSKHTSGFFCAAVIFFCFRFRIYDIDTQFHNVDVKMLKLEEQQYLGEATCALSEDPFLMISKVVEGSTQIPICKTEVKKNDHNPIWKPVFLNIQQVRSKRRLGVSAYCFVSDIGFFTCCIVNNSARKVRKSLIELEKLHSGGQGESLFLPTADGKDNHDEVLKIQIYVDKYTESVQHTFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYMDPSGRPNAYQRAILEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSNHYCEVDGIQGIMMAYTSALLNVSLAGPTLFGPIINNAALIASESVANGKRKYFVLLIITDGVVTDLQETKDALIKASDLPLSLLIVGVGADFKDMEVLDADKGERLESFPGRFASRDIVQFVLFRDVQSRWTVNLISLADHEDIPNSAVLGAVGSYVTFCFLMVSLKALLLKEIDPLTPQDYARRNKNRGKVDRNHGKRSGSSEEAKEKEEEEEELMFPIYSDRSQQDMSAMVSALAQVIGASPNVYDQNRLTDHMSQSTSETNSQQWSTRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDKAALKFKGSKAKLNFPERVQLQPPPSMTTTTTSFPSSSGEFSFLTNPPHNPQPPLVLAPPTIPFFSQQPYHYNYQYNPHLLGSVGGGGHNLFNYSTQQQLQPYTSGSSSSSSSYGMSRQQHEQEREQLLQFPIMQFGAPSSSTSHPPSTWPYHEFDGQR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1611 809 CDD vWA_copine_like 229 474 IPR010734 -
Lele22g1611 809 Gene3D AP2/ERF domain 608 668 IPR036955 GO:0003700|GO:0006355
Lele22g1611 809 PRINTS Ethylene responsive element binding protein signature 610 621 IPR001471 GO:0003700|GO:0006355
Lele22g1611 809 PRINTS Ethylene responsive element binding protein signature 632 648 IPR001471 GO:0003700|GO:0006355
Lele22g1611 809 MobiDBLite consensus disorder prediction 516 550 - -
Lele22g1611 809 MobiDBLite consensus disorder prediction 590 606 - -
Lele22g1611 809 CDD AP2 609 667 IPR001471 GO:0003700|GO:0006355
Lele22g1611 809 PANTHER COPINE 123 465 IPR045052 GO:0005544
Lele22g1611 809 Pfam Copine 278 474 IPR010734 -
Lele22g1611 809 MobiDBLite consensus disorder prediction 671 691 - -
Lele22g1611 809 MobiDBLite consensus disorder prediction 749 768 - -
Lele22g1611 809 SMART rav1_2 609 672 IPR001471 GO:0003700|GO:0006355
Lele22g1611 809 SUPERFAMILY DNA-binding domain 609 667 IPR016177 GO:0003677
Lele22g1611 809 MobiDBLite consensus disorder prediction 749 809 - -
Lele22g1611 809 SUPERFAMILY vWA-like 258 454 IPR036465 -
Lele22g1611 809 MobiDBLite consensus disorder prediction 784 799 - -
Lele22g1611 809 MobiDBLite consensus disorder prediction 670 691 - -
Lele22g1611 809 MobiDBLite consensus disorder prediction 590 610 - -
Lele22g1611 809 Pfam AP2 domain 609 658 IPR001471 GO:0003700|GO:0006355
Lele22g1611 809 FunFam Ethylene-responsive transcription factor 2 608 667 - -
Lele22g1611 809 ProSiteProfiles AP2/ERF domain profile. 609 666 IPR001471 GO:0003700|GO:0006355
Lele22g1611 809 SMART VWA_4 257 459 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1611 Lele-ChrLele22 21628301 21644118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1611 530 702 AP2-EREBP Transcription Factor Family AT5G07310 58.011 2.66e-47 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele22g1611 Copine 2e-68 CL0128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1611 22 21628301 21644118 Lele22g1611 22 21628301 21644118 ECH
Lele22g1611 22 21628301 21644118 Lele05g0636 05 3743641 3744918 ECH
Lele22g1611 22 21628301 21644118 Lele06g0456 06 2798782 2800662 ECH
Lele22g1611 22 21628301 21644118 Lele07g0667 07 3802791 3804717 ECH
Lele22g1611 22 21628301 21644118 Lele08g0469 08 2873322 2874606 ECH
Lele22g1611 22 21628301 21644118 Lele23g0383 23 2773051 2774713 hybridization