Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1580 ATGGTCCGATCTCCTTGTTGCGAGAAACAACACACCAACAAAGGCGCTTGGACCAAAGAAGAAGACCAACGCCTCATCAACTACATCTCCCTCCATGGCCAAGGCTCCTGGCGTTCCCTCCCCAAAGCTGCTGGTTTACTGAGATGTGGGAAAAGTTGCAGGCTCAGATGGATTAACTATCTAAGGCCTGATCTCAAGAGAGGCAATTTTACTCAGGACGAAGACGACCTTATCATTAATCTTCACAGCTTACTCGGAAACAAGTGGTCTCTTATAGCAGCTAGGTTACCTGGTAGAACCGATAATGAGATCAAGAACTACTGGAACACCCACATCAAGCGCAAACTCTATAGCCTTGGAATCGACCCTCAAACGCACCGTCCACTTACCTCCGCCGAAGCAGCAACCACCACTCTGGAGATCGGCTATAACAAGGGAAGTACCAGTAACGACAAGAATAACCCTAAACTGAAGCTAGTCTCATCGTCAGGGGAAGATTCAAATAGCAATAGTAGCAGTGGGATTACCACAGACGAATCAGCCAATTCTGATAATCATCATCATCATCAACTCATCAACTTGGAGCTCTCCATAGGTCCTCCTTCTTCCTCTAACGACGACAATAAAGCCGTCGTCGTTCACCCTTCACCAGTAGTCTCAGACGACAAGTTAAAACGGCAACGACGACTTGAGGAGGAAGAAGTGCGTTTGTGTTGCAGTTTAGGTTTTCAGAGCGTTGGTGGTGGTAATAATGAAGCATGTAGGTGCAAAGCCAAGAGGAATAGTACATGTTCAGTAATTACTACTGCACCTACTTCTACTGCTGCATCAGACAATAACGTTTTCAGATTTTTTACTCCCTTCAATATTTCTTAG 876 0.4566 MVRSPCCEKQHTNKGAWTKEEDQRLINYISLHGQGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQDEDDLIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSLGIDPQTHRPLTSAEAATTTLEIGYNKGSTSNDKNNPKLKLVSSSGEDSNSNSSSGITTDESANSDNHHHHQLINLELSIGPPSSSNDDNKAVVVHPSPVVSDDKLKRQRRLEEEEVRLCCSLGFQSVGGGNNEACRCKAKRNSTCSVITTAPTSTAASDNNVFRFFTPFNIS 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1580 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele22g1580 291 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele22g1580 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele22g1580 291 MobiDBLite consensus disorder prediction 143 185 - -
Lele22g1580 291 MobiDBLite consensus disorder prediction 143 180 - -
Lele22g1580 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele22g1580 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele22g1580 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele22g1580 291 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lele22g1580 291 Gene3D - 69 116 - -
Lele22g1580 291 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 194 - -
Lele22g1580 291 FunFam Myb transcription factor 68 137 - -
Lele22g1580 291 FunFam MYB-related transcription factor 13 66 - -
Lele22g1580 291 CDD SANT 16 61 IPR001005 -
Lele22g1580 291 Gene3D - 14 66 - -
Lele22g1580 291 SMART sant 66 114 IPR001005 -
Lele22g1580 291 SMART sant 13 63 IPR001005 -
Lele22g1580 291 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1580 Lele-ChrLele22 21430235 21431431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1580 1 199 MYB Transcription Factor Family AT4G09460 63.592 4.16e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele22g1580 Myb_DNA-binding 1e-14 CL0123