Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1572 ATGGCTTCCCCTCCGGTGAATTCCTTACCCATAGCGTATCAGGCATGGACGAGCGTCGCCGTACCGGACTGGTTGAACAAAGGGGACAACGCGTGGCAGATGATCTCGGCGACTCTGGTAGGGATACAGAGTATGCCGGGCCTTGTGATTCTGTACGGAAGCATTGTGAAGAAGAAATGGGCCGTCAACTCTGCTTTCATGGCTCTCTATGCCTTCGCCGCCGTTTGCATCTGCTGGGTCACTTGGGCTTACAAGATGTCCTTCGGCGACAAGCTTCTGCCCTTCTGGGGGAAGGCCGGACCAGCGTTGGGGCAGAAGTTTCTGGTCCGTCAGGCTGCGCTGCCGGCAACCCCGCATTACCATAAGAACGGGGACCTGGAGACGGCGGAGATAGAGCCGTTCTACCCGATGGCAACGATGGTGTGGTTTCAGTGCGTGTTCGCCGCCATCGCGGTGGTTATACTGGCCGGATCGGTGCTGGCGAGGATGAATTTCAAAGCGTGGATGATGTTTGTGCCGTTGTGGCTCACGTTTTCATACACCGTCGGAGCTTTCAGCTTGTGGGGCGGTGGGTTCTTGTTTCACTGGGGCGTCATGGACTACTCCGGCGGCTACGTCATCCACCTTTCTTCTGGAATTGCTGGTTTCACCGCCGCTTACTGGGTGGGACCAAGGTTGAAGAAAGATAGAGAGAGGTTTCCGCCGAACAATGTGTTGCTGACGCTGGCGGGGGCGGGGCTGCTGTGGCTGGGATGGGCGGGCTTCAACGGCGGCGATCCCTACTCGGCCAACACCGACTCGTCCATGGCTGTTCTCAACACTAACATATGCGCCGCCACCAGTCTGCTGGTTTGGACGTGGCTTGACGTCATCTTCTTCAAGAAACCCTCCGTCATCGGAGCCGTCCAGGGCATGATCACCGGTCTCGTGTGCATCACTCCCGGCGCCGGTCTGGTTCAAGGATGGGCAGCCATAGTGATGGGGGTACTATCAGGTAGTGTGCCCTGGTGGAGCATGATGATATTAGGCAAGAAACTCAAGATATTCCAAATGGTGGACGACACTCTCGCCGTCTTCCACACTCACGCCATCGCCGGACTTCTCGGTGGCATCCTCACCGGCCTCTTCGCAGAGCCGCGCCTGAGTGCTCTCTTCCTCCCCGTCAGCAACTCAAGAGGAGGCGTGTACGGAGGCTCCGGCGGTGTCCAGATCGGCAAACAAATCGTGGGAGGGCTGTTCATCATAGGATGGAACCTGGTGGCGACATCCATCATATGCGTGGTCATAAGTTTTATAATTCCTCTAAGGATGTCGGAGGAGGAATTGGAGATCGGAGACGACGCCGTTCACGGAGAAGAAGCTTATGCATTGTGGGGCGACGGAGAGAAGCTGAGTATATATTCTGACGATACTACTCATCATCACCATGGAGTTTTAGCATCGAGTGGTGCCACTCAAGTCCTCTAA 1467 0.5624 MASPPVNSLPIAYQAWTSVAVPDWLNKGDNAWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVCICWVTWAYKMSFGDKLLPFWGKAGPALGQKFLVRQAALPATPHYHKNGDLETAEIEPFYPMATMVWFQCVFAAIAVVILAGSVLARMNFKAWMMFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRLKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWWSMMILGKKLKIFQMVDDTLAVFHTHAIAGLLGGILTGLFAEPRLSALFLPVSNSRGGVYGGSGGVQIGKQIVGGLFIIGWNLVATSIICVVISFIIPLRMSEEELEIGDDAVHGEEAYALWGDGEKLSIYSDDTTHHHHGVLASSGATQVL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1572 488 Gene3D Ammonium transporter AmtB like domains 10 458 IPR029020 -
Lele22g1572 488 FunFam Ammonium transporter 12 458 - -
Lele22g1572 488 ProSitePatterns Ammonium transporters signature. 200 225 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lele22g1572 488 TIGRFAM amt: ammonium transporter 29 455 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele22g1572 488 PANTHER AMMONIUM TRANSPORTER MEP2 17 464 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lele22g1572 488 SUPERFAMILY Ammonium transporter 24 437 - -
Lele22g1572 488 Pfam Ammonium Transporter Family 31 455 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lele22g1572 488 PRINTS Rhesus blood group protein signature 144 160 IPR002229 GO:0005886
Lele22g1572 488 PRINTS Rhesus blood group protein signature 363 379 IPR002229 GO:0005886
Lele22g1572 488 PRINTS Rhesus blood group protein signature 239 257 IPR002229 GO:0005886
Lele22g1572 488 PRINTS Rhesus blood group protein signature 270 292 IPR002229 GO:0005886
Lele22g1572 488 PRINTS Rhesus blood group protein signature 325 343 IPR002229 GO:0005886
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1572 Lele-ChrLele22 21379094 21382760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1572 137 474 Inorganic Solute Cotransporters AT2G38290 71.006 1.94e-166 472