Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1543 ATGGATGATGGCGGCGACCTCCAACGACCAATCGTTCTCCTTCACCCTCGGCCTAGAAGTGCGTCATGCCTTTCTGGATCTGGGTTCATTATTGTAGTGACAAATCTGATGCTTCACTCGTCTTCTTACCACACATTATACGACGAGATTCACCGTCGAAGCTACGGAACGCATCGTGGAAGCAGAAAAGCCATACATGGCCTAGCTTCCTTTCCTTCATCAACAAACCCTAAAACTGCAGATAGAGTTTTATTTGAATGCCACTCTTTTCCTCTCGTCATGGCATACATTGCCTCAACTGCTTCTGCCACATTTTCGGCTCTCCAGCGCGGGGCAAGTCAACAGAGTAAAACTTTTCCAGGCTTTTCGAGAAGTAGGGGAATTCATTCATTGTTATTTACAAATTCTTCGAGGAAACGGTTGCAAGTACGATTGTTTTCTTCTGGGACAAATCGCAGCAATGGAGATATTGTGGAGACATCTGAGAGTGAAAAGAAACCGATGAACTACGCTTGGCCTGATACAAGGAAGCCTAGGGTGTGCATATTGGGTGGTGGATTTGGCGGTTTATATACTGCATTAAGGTTGGAGTCACTTGTGTGGTCTGACGACAAAAAGCCACAGGTTCTTCTTGTTGACCAGTGTGAACGTTTTGTTTTCAAGCCCATGTTGTACGAGCTTCTTTCTGGAGAAGTGGATGAATGGGAAATAGCTCCCCGATTCTTAGATTTGCTAGCAAACACTAGCGTCCAGTTTTTGCAAGACAGAGTTAAACTTCTGCATCCCTCTGATAATTGGGGGATGGATGGACCGCCAACATCTAGTTGTGGAGGAACTGTGCATCTTGAAAGCGGCCTTTCTATAGAATATGACTGGCTGGTTCTTGCTTTGGGAGCTGAAAGTAAACTTGATTTTGTACCGGGAGCAACTGATTTTGCATTGCCATTCTCCACACTAGAGGATGCAATTAAAGTTAATAATAATTTAAAAACATTGGAGAGAAAACACTTCAGTAAGGATTCCCAAATCAGTGTGGCAGTTGTTGGCTGTGGTTACTCTGGAGTTGAGTTAGCTGCTACAGTGGCAGAGAGATTAAAGGACAAAGGGGTTGTTAGAGCAATCGATGCTGAAAACATGATCTGCCCAACTGCCCCGCCTGGCAATAGGGAAGCTGCACTGAAAGTTCTTTCATCCAGAAAGGTTGAACTTCTATTGGGTTATCTAGTCCGCTGCATTCGGAAGATGAGTGACTTGGAGTCTTCAGATGCCCTGACAGGGGAAGGTGAAAATCAGGGAAATCAAGCTGTACATGATTCTGATAAATATGCTTTGGAGCTGCAACCTACCGAAAGGGGATTACAGAAGAGAATTCTAGAAGCAGATCTAGTATTGTGGACTGTTGGTTCTAAATCTTCTCTTACTCAGATAGAACCCTCAGATTTATCATATCCACTTCCTCTTAATGGCCGGGGGCAAGCAGAAACAGATGAAACTCTTCGTGTTAAGGGCCACCCACGGATATTTGCTCTTGGCGACTCCTCTGCAATAAGAGATTCACATGGAAGGATCCTTCCGGCCACCGCACAGGTTGCATTTCAGCAAGCAGACTTTGCTGGTTGGAATCTTTGGGCTGCGATCAATGGCCGTCCACTTTTGCCATTTAGGTTTCAGAATTTGGGTGAGATGATGACGCTGGGAAGAAATGATGCTGCCATTTCTCCCAGTTTTATTGAGGGATTGACCTTAGAAGGTCCGATTGGTCATACAGCAAGGAAACTAGCATATTTGTTGAGGTTACCAACAGATGAACATAGGCTTAAAGTGGGGATCAGCTGGTTCACAAAATCTGCCATTGATTCAGTAGCTTCACTACAGAGCACCTTAACCAAGGTTCTTTCCGGTTCATAA 1908 0.4476 MDDGGDLQRPIVLLHPRPRSASCLSGSGFIIVVTNLMLHSSSYHTLYDEIHRRSYGTHRGSRKAIHGLASFPSSTNPKTADRVLFECHSFPLVMAYIASTASATFSALQRGASQQSKTFPGFSRSRGIHSLLFTNSSRKRLQVRLFSSGTNRSNGDIVETSESEKKPMNYAWPDTRKPRVCILGGGFGGLYTALRLESLVWSDDKKPQVLLVDQCERFVFKPMLYELLSGEVDEWEIAPRFLDLLANTSVQFLQDRVKLLHPSDNWGMDGPPTSSCGGTVHLESGLSIEYDWLVLALGAESKLDFVPGATDFALPFSTLEDAIKVNNNLKTLERKHFSKDSQISVAVVGCGYSGVELAATVAERLKDKGVVRAIDAENMICPTAPPGNREAALKVLSSRKVELLLGYLVRCIRKMSDLESSDALTGEGENQGNQAVHDSDKYALELQPTERGLQKRILEADLVLWTVGSKSSLTQIEPSDLSYPLPLNGRGQAETDETLRVKGHPRIFALGDSSAIRDSHGRILPATAQVAFQQADFAGWNLWAAINGRPLLPFRFQNLGEMMTLGRNDAAISPSFIEGLTLEGPIGHTARKLAYLLRLPTDEHRLKVGISWFTKSAIDSVASLQSTLTKVLSGS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1543 635 Pfam Pyridine nucleotide-disulphide oxidoreductase 179 535 IPR023753 GO:0016491
Lele22g1543 635 PRINTS Pyridine nucleotide disulphide reductase class-I signature 344 369 - -
Lele22g1543 635 PRINTS Pyridine nucleotide disulphide reductase class-I signature 179 201 - -
Lele22g1543 635 PRINTS Pyridine nucleotide disulphide reductase class-I signature 507 514 - -
Lele22g1543 635 FunFam Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial 175 608 - -
Lele22g1543 635 Gene3D - 175 608 - -
Lele22g1543 635 PRINTS FAD-dependent pyridine nucleotide reductase signature 344 362 - -
Lele22g1543 635 PRINTS FAD-dependent pyridine nucleotide reductase signature 460 476 - -
Lele22g1543 635 PRINTS FAD-dependent pyridine nucleotide reductase signature 290 308 - -
Lele22g1543 635 PRINTS FAD-dependent pyridine nucleotide reductase signature 180 199 - -
Lele22g1543 635 PANTHER APOPTOSIS-INDUCING FACTOR 1 112 631 - -
Lele22g1543 635 SUPERFAMILY FAD/NAD(P)-binding domain 174 543 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1543 Lele-ChrLele22 21091365 21096461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1543 175 536 Chloroplast and Mitochondria Gene Families AT4G21490 22.340 3.47e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1543 22 21091365 21096461 Lele22g1543 22 21091365 21096461 ECH
Lele22g1543 22 21091365 21096461 Lele23g0455 23 3301061 3305502 hybridization
Lele22g1543 22 21091365 21096461 Lele24g1503 24 20863330 20869394 hybridization