Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1522 ATGGCTGGCAAAAGTGGCAAGAAACCATTAAGCCTCAACGATAGCCATTATCGATTCCTCCTAGACCTTTCTGCTCCTCCGAAGCCCTCCTCAAAGCCATCTGACGATGACGACGAGTCGTCCCCGACAATACTCAAAGGCCGAAGGCGGCCCGAGGGAAAAGCTTTATTTAGCAATGAGGAAGATGATAACATCCCTGGATTTTCTGCGATTACCGACTTTGATTCTCCTATTGAGCTACGCTCGGCCGAAGACAAAGAGCCCGTCAAGGTAGATGGTCGACATCGTCCCTGTACAGTGTCGCCGAAGGAAAATAGTAAAGATCAAGGTGACAATATTCCCCAGTCTAAAGACGCGACAGACTTTGATACCCACAAAGGGGAAAAGAAGACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTATGCAAGGTGTCATATGCAGACAATGATAATAATACTGATAACTTGGTGGCGCTCGATGACTCGGAGGTTTCTGACCATGTGGATTTTGATTCACCCCTTTGGCCGACGAAAAAATCAACTGGGATTAAGAAGAGTCACGGTGGGAGTGAAATTAGGGATATATTAGATGAGTTGAGCTCGAAGTTTGATATTCTGTCAATTGAGAAGAAGCGGGTAGCGAAATCAGCGCATACATTTGAAAATTGTTCAGGATTTGCTATAGGAAATGAGACTACGGAAGATAAGAATATTGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAACAGGACCCATGTGACAGTTCATCTGATGCATCTAAGAGTGCGACTGGAAGCATTGAACATGTAGAAGATGATTCGGACGATTCTGTTGAAGTGCTGGATCATTTTGACTCTGACAATGTTGATTCTATAACTTTAAATGGTCCACATTCCACATACAAGTTGCCAGGCAAAATTGCAAAAATGTTGTATCCCCATCAACGTGATGGTTTGAAGTGGCTCTGGTCTCTGCATTGTCTGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGGAAAACAATGCAGATTTGTAGTTTTCTAGCTGGTTTGTTCAATTCACGTTTGATTAAAAGGGCATTGGTGGTGGCACCAAAAACCTTACTTCCCCATTGGATCAAAGAACTATCAGCTGTTGGTCTTTCTGAGAAGACAAAGGAATACTTTGGAACTTGTACTAAAGCCCGAGAGTATGAACTTCAATACATACTCCAGGACAAAGGTGTTCTTCTTACAACATACGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATCTATCTGATGATGAGGAAAGTGAAGACGGCCCCTTATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCAAGCACACAAAGAGCTAAAAGTTTGCTAGAGATACCAAGTGGCCATCGCATAATCATCAGTGGCACGCCATTGCAAAATAATCTGAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGAAATGGTTTAAAGAAAATTATGAGTCAGCTATACTTCGTGGAAATGAAAAAAAAGCTTCTGAGAGAGAGAAGCGTGTTGGTTCTTCTGTTGCAAAGATGCTCAGAGATCGTATTCAGCCTTACTTTTTAAGACGTCTCAAGAGTGAGGTTTTTAATCAAGATGACAAGAATACAACAACGAAACTCTCTCAGAAACGAGAGATTATCGTGTGGCTACGATTGACTAGTGTTCAGAGATATCTTTATGAAGCGTTTCTGAGGAGTGAGATTGTTCTTTCAGCATTTGACGGCTCACCACTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCATCCGCTTTTGTTGACTAAGCGGGCAGCTGAAGATGTGTTGGAAGGGATGGACTCAATGTTAAAGCCAGAAGAGGTTAACGTTGCGGAGAAATTGGCAATGCACATAGCTCATGTTGCTGACACAGACAAGTTCAAGGCTGAGCATGATGTCTCGTGCAAAATATCTTTCATAATGTCACTACTGGATAATTTGATCCCACAAGGACATCATGTGCTTATTTTTTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGCTATGAATTTGTACGAATTGATGGAACAACAAAAGCTAGTGATAGAATAAGGATTGTTAATGAATTCCAAGATGGTTCTGTAGCTCCCATATTTCTTTTGACATCTCAAGTTGGTGGTTTGGGGTTGACACTTACTAAGGCAGATCGTGTTATTGTAGCTGATCCTGCTTGGAACCCGAGTACGGATAACCAAAGTGTTGACCGAGCATACCGTATTGGCCAAAAGAAAGATGTTATTGTATATAGACTAATGACATGTGGAACTGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGATTGTTTAAAACAGCAACAGAGCATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTTCCTAAGGAGGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAGGAGGAGCATGCTTGCGAATATACAGTGGATGACTCTTTTAAAGTACACATAGAGTTCTTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTCTCCAAAACAGCACCAGTTCAAGAAGCGCCTGAGGATGAAGTGTCAAGGAATCATGGGACCAGATATGTTGGAACTTCCGCATCTACTTCCATTGAACGTCCTGTTGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTCAAATTGAGCAAAAAAGTTTCTTCCCCAAGTAGTGCTGGTAAATTGACTGAGTCTGAAATCAGGGATAAAATCAAACGGATTTCTCAAACACTTGCAAACAAGGCGATGATTTCGAGATTACCTGATGGGGGAGAGAAACTACAGCAGCGGCTTGTTGAACTAAATTCGGAGCTCAGCAAATTGAAGATGGAAGAAAGAAATGTGATTGATTTGGATAATATAAGTGGAGAATTTCAAAGGGTATTAAATGTGTAG 3054 0.4175 MAGKSGKKPLSLNDSHYRFLLDLSAPPKPSSKPSDDDDESSPTILKGRRRPEGKALFSNEEDDNIPGFSAITDFDSPIELRSAEDKEPVKVDGRHRPCTVSPKENSKDQGDNIPQSKDATDFDTHKGEKKTKVKMEGRRRLCKVSYADNDNNTDNLVALDDSEVSDHVDFDSPLWPTKKSTGIKKSHGGSEIRDILDELSSKFDILSIEKKRVAKSAHTFENCSGFAIGNETTEDKNIDYASADSSFSAQQDPCDSSSDASKSATGSIEHVEDDSDDSVEVLDHFDSDNVDSITLNGPHSTYKLPGKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICSFLAGLFNSRLIKRALVVAPKTLLPHWIKELSAVGLSEKTKEYFGTCTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYLSDDEESEDGPLWDYMILDEGHLIKNPSTQRAKSLLEIPSGHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENYESAILRGNEKKASEREKRVGSSVAKMLRDRIQPYFLRRLKSEVFNQDDKNTTTKLSQKREIIVWLRLTSVQRYLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIAHVADTDKFKAEHDVSCKISFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKASDRIRIVNEFQDGSVAPIFLLTSQVGGLGLTLTKADRVIVADPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLEEEHACEYTVDDSFKVHIEFLKSQGIAGVSHHSLLFSKTAPVQEAPEDEVSRNHGTRYVGTSASTSIERPVDGAEFAFNPKEVKLSKKVSSPSSAGKLTESEIRDKIKRISQTLANKAMISRLPDGGEKLQQRLVELNSELSKLKMEERNVIDLDNISGEFQRVLNV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1522 1017 MobiDBLite consensus disorder prediction 18 134 - -
Lele22g1522 1017 MobiDBLite consensus disorder prediction 31 59 - -
Lele22g1522 1017 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 499 IPR014001 -
Lele22g1522 1017 Gene3D - 294 570 IPR038718 -
Lele22g1522 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 549 IPR027417 -
Lele22g1522 1017 FunFam Protein CHROMATIN REMODELING 24 291 569 - -
Lele22g1522 1017 MobiDBLite consensus disorder prediction 244 265 - -
Lele22g1522 1017 SMART ultradead3 307 507 IPR014001 -
Lele22g1522 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 841 IPR027417 -
Lele22g1522 1017 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Lele22g1522 1017 Gene3D - 571 868 IPR027417 -
Lele22g1522 1017 MobiDBLite consensus disorder prediction 118 134 - -
Lele22g1522 1017 Pfam Helicase conserved C-terminal domain 669 781 IPR001650 -
Lele22g1522 1017 MobiDBLite consensus disorder prediction 103 117 - -
Lele22g1522 1017 Coils Coil 977 997 - -
Lele22g1522 1017 MobiDBLite consensus disorder prediction 244 276 - -
Lele22g1522 1017 MobiDBLite consensus disorder prediction 78 102 - -
Lele22g1522 1017 PANTHER SNF2/RAD54 FAMILY MEMBER 126 996 - -
Lele22g1522 1017 CDD SF2_C_SNF 661 792 - -
Lele22g1522 1017 SMART helicmild6 698 781 IPR001650 -
Lele22g1522 1017 Pfam SNF2-related domain 327 619 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1522 Lele-ChrLele22 20896310 20905252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g1522 312 835 RAD5 or RAD16-like Gene Family AT1G02670 25.823 4.57e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele22g1522 SNF2_N 3.1e-46 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1522 22 20896310 20905252 Lele23g0474 23 3471498 3473170 hybridization
Lele22g1522 22 20896310 20905252 Lele24g1485 24 20677715 20686541 hybridization